| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 887757 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 41827.7 Isoelectric Point: 9.2218 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 379 | 0 |
| QRACGSASSATVVVPNGTFLLKVITFGGPCKSKITFQVTGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFN SAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQLSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKEL NEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSS PCTGITLQDIKLIYNKGTPATSLCFNAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MTKPAITFPL LFTLLTFIDV SSTASNVFNV VSFGAKPDGV TDSTAAFLKA WQRACGSASS 60 ATVVVPNGTF LLKVITFGGP CKSKITFQVT GTVVAPEDYR TFGNSGYWIL FNKVNRFSLV 120 GGTFDARANG FWSCRKSGQN CPPGVRSISF NSAKDVIISG VKSMNSQVSH MTLNGCTNVV 180 VRNVKLVAPG NSPNTDGFHV QLSTGVTFTG STVQTGDDCV AIGPGTRNFL ITKLACGPGH 240 GVSIGSLAKE LNEDGVENVT VSSSVFTGSQ NGVRIKSWAR PSTGFVRNVF FQDLVMKNVE 300 NPIIIDQNYC PTHEGCPNEY SGVKISQVTY KNIQGTSATQ EAMKLVCSKS SPCTGITLQD 360 IKLIYNKGTP ATSLCFNAVG KSLGVIQPTS CLNR* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02218 | PLN02218 | 3.0e-86 | 18 | 388 | 378 | + polygalacturonase ADPG |
| pfam00295 | Glyco_hydro_28 | 1.0e-89 | 55 | 378 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02188 | PLN02188 | 5.0e-102 | 20 | 391 | 377 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02793 | PLN02793 | 6.0e-105 | 27 | 393 | 374 | + Probable polygalacturonase |
| PLN02155 | PLN02155 | 0 | 1 | 394 | 394 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172056.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_172057.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181917.1 | 0 | 10 | 392 | 11 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002309713.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 2e-21 | 24 | 381 | 17 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 2e-20 | 41 | 354 | 6 | 310 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-20 | 41 | 354 | 6 | 310 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-20 | 41 | 354 | 6 | 310 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-20 | 41 | 354 | 6 | 310 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
