| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 88799 |
| Family | PL1 |
| Protein Properties | Length: 345 Molecular Weight: 38128.6 Isoelectric Point: 6.4654 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 62 | 267 | 0 |
| IQEEPVWIVFQSDMTITLRNELVVNSHKTLDGRGASVHIAHGACITIFRASRVIIHGLNIHHCVTTEGGWVATKPGHLSHRGRADGDGIRVFESHHVWID HNSFWECHDGLVDVLHGSNFITISNNHFHDHDKVMLLGHADESELDHDMKITVVYNRFGPRCVQRMPRCRFGYFHVADNDYHAWEMYAIGGSAHPTIISQ GNRFLA | |||
| Full Sequence |
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| Protein Sequence Length: 345 Download |
| NAIDDCRKSA VDWNSDRMHM AGCGIGFGSG AFGGANGNYY TVTDPSDDPL NPQPGTLRYA 60 VIQEEPVWIV FQSDMTITLR NELVVNSHKT LDGRGASVHI AHGACITIFR ASRVIIHGLN 120 IHHCVTTEGG WVATKPGHLS HRGRADGDGI RVFESHHVWI DHNSFWECHD GLVDVLHGSN 180 FITISNNHFH DHDKVMLLGH ADESELDHDM KITVVYNRFG PRCVQRMPRC RFGYFHVADN 240 DYHAWEMYAI GGSAHPTIIS QGNRFLASDN RDAKEITKRV GHAGDWISID DVFLNGAFFV 300 ESGRGDLISR YTPEQQFEVK SGSQVTAMTA EVGVLKCQSS LATC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR04247 | NosD_copper_fam | 0.0004 | 76 | 191 | 127 | + nitrous oxide reductase family maturation protein NosD. Members of this family include NosD, a repetitive periplasmic protein required for the maturation of the copper-containing enzyme nitrous-oxide reductase. NosD appears to be part of a complex with NosF (an ABC transporter family ATP-binding protein) and NosY (a six-helix transmembrane protein in the ABC-2 permease family). However, NosDFY-like complexes appear to occur also in species whose copper requiring enzymes are something other than nitrous-oxide reductase. | ||
| COG3866 | PelB | 3.0e-32 | 66 | 265 | 218 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-64 | 70 | 265 | 204 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-70 | 74 | 269 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK66161.1 | 0 | 1 | 338 | 20 | 363 | pectate lyase [Fragaria x ananassa] |
| RefSeq | NP_172656.1 | 0 | 1 | 339 | 37 | 380 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_189065.2 | 0 | 1 | 338 | 104 | 446 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263615.1 | 0 | 1 | 339 | 51 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002518442.1 | 0 | 1 | 337 | 44 | 384 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 1 | 335 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 1 | 335 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-21 | 69 | 266 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 7e-16 | 80 | 265 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.000000000000001 | 148 | 243 | 205 | 317 | A Chain A, Bacillus Subtilis Pectate Lyase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778688 | 345 | 1 | 338 | 0 |
| EC964189 | 303 | 43 | 338 | 0 |
| ES827871 | 306 | 39 | 337 | 0 |
| DT556743 | 298 | 47 | 338 | 0 |
| DW062360 | 273 | 39 | 305 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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