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Basic Information | |
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Species | Selaginella moellendorffii |
Cazyme ID | 89085 |
Family | GH28 |
Protein Properties | Length: 384 Molecular Weight: 40354.2 Isoelectric Point: 5.2797 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 39 | 368 | 0 |
VEDSVFLIPQSFTFLIWPASFKGPCKSNMTMQIDGTIVAPGSPDQYEPGQRNSWISIVKLTSFSITGIGTIDGRGQTWWNISCKHNPSPGCNDEDAPTAL WVFGSTGLNMSGIRIQNSQQMNVAFVSCHDVIVAKIRIENPQNSPNTDGIHIESSTNVTVEHAAIGTGSDDCVSIGSGSSNVVIRDCECGPGHGISIGSL GKGESAAYVSSVLVHRVQITGTMNGLRIKTWQGGRGSASNIRFENVSMSGVANPIIIDQNYCDALRPCSPQGSAVQVKSVEYLHIRGTSATAIATSFDCS ASLPCLDLLLHDINLTQSSGAQASASCSNA |
Full Sequence |
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Protein Sequence Length: 384 Download |
MISSGEPNVF NVRQFNARGD GIQNDTQAFL DAWNAACLVE DSVFLIPQSF TFLIWPASFK 60 GPCKSNMTMQ IDGTIVAPGS PDQYEPGQRN SWISIVKLTS FSITGIGTID GRGQTWWNIS 120 CKHNPSPGCN DEDAPTALWV FGSTGLNMSG IRIQNSQQMN VAFVSCHDVI VAKIRIENPQ 180 NSPNTDGIHI ESSTNVTVEH AAIGTGSDDC VSIGSGSSNV VIRDCECGPG HGISIGSLGK 240 GESAAYVSSV LVHRVQITGT MNGLRIKTWQ GGRGSASNIR FENVSMSGVA NPIIIDQNYC 300 DALRPCSPQG SAVQVKSVEY LHIRGTSATA IATSFDCSAS LPCLDLLLHD INLTQSSGAQ 360 ASASCSNAFG VSSGSVVPAS CLA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-79 | 10 | 353 | 350 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-81 | 10 | 354 | 348 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-86 | 42 | 354 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-97 | 7 | 353 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-120 | 9 | 383 | 376 | + Probable polygalacturonase |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAU43991.1 | 0 | 4 | 383 | 28 | 408 | unknown protein [Oryza sativa Japonica Group] |
GenBank | ABR18059.1 | 0 | 8 | 382 | 87 | 458 | unknown [Picea sitchensis] |
GenBank | EEC79626.1 | 0 | 4 | 383 | 28 | 408 | hypothetical protein OsI_20838 [Oryza sativa Indica Group] |
Swiss-Prot | P35336 | 0 | 11 | 378 | 91 | 453 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002529616.1 | 0 | 3 | 381 | 101 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-23 | 90 | 360 | 100 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 8e-19 | 109 | 373 | 107 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 8e-19 | 109 | 373 | 107 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 5e-18 | 98 | 367 | 62 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-18 | 98 | 367 | 62 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE091344 | 246 | 108 | 353 | 0 |
GO844129 | 336 | 17 | 343 | 0 |
FS942787 | 289 | 92 | 379 | 0 |
EE093402 | 252 | 92 | 343 | 0 |
DW479564 | 315 | 17 | 326 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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