Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 891621 |
Family | GH28 |
Protein Properties | Length: 475 Molecular Weight: 51284.5 Isoelectric Point: 4.6079 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 103 | 430 | 0 |
KAACAVESGVVLAPEGGVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEWPEKDDKNQWLVFYRLDGITFSGKGTVEGNGQKWWDLPCKPHRGPDGSSS SGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGP SHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCRNETSAVKVFDVEYRNIKGTYDVR SPPIHFACSDTVACTNITMSEVELLPEE |
Full Sequence |
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Protein Sequence Length: 475 Download |
MRSLSGILVI YIISTVLFGH FTYVAQGRYH YHKSRHGRTH PLPPPPPPPL ETANPPDQVP 60 SDPYPNPNPA PGDSDSCVFD VTSFGAVGDG SCNDTVAFQN AWKAACAVES GVVLAPEGGV 120 FKITSTIFSG PCKPGLVFQL DGVLMPPDGP EEWPEKDDKN QWLVFYRLDG ITFSGKGTVE 180 GNGQKWWDLP CKPHRGPDGS SSSGPCASPT MIRFFMSNNI EVKGLRIQNS PQFHMKFDGC 240 QGVLINEIQI SSPKLSPNTD GIHLGNTRSV GIYNSVVSNG DDCISIGTGC SDVDIQGVTC 300 GPSHGISIGS LGVHNSQACV SNITVRNTVI RDSDNGLRVK TWQGGTGSVS NLLFENIQME 360 NVLNCIIVDQ YYCQSKDCRN ETSAVKVFDV EYRNIKGTYD VRSPPIHFAC SDTVACTNIT 420 MSEVELLPEE GELVDDPFCW NAYGTQETLT IPPIDCLLGG SPVVEEAYDS NYSC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-72 | 79 | 421 | 346 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 7.0e-74 | 76 | 457 | 391 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 7.0e-87 | 112 | 422 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-91 | 81 | 421 | 345 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-104 | 78 | 470 | 396 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79535.1 | 0 | 1 | 474 | 1 | 492 | AC023673_23 F21D18.18 [Arabidopsis thaliana] |
GenBank | AAK95305.1 | 0 | 1 | 474 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 474 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 68 | 474 | 72 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519290.1 | 0 | 1 | 474 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-24 | 141 | 426 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-24 | 141 | 426 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-24 | 141 | 426 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-24 | 141 | 426 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-24 | 141 | 426 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |