Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 893483 |
Family | GH28 |
Protein Properties | Length: 539 Molecular Weight: 59248.6 Isoelectric Point: 7.0535 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 145 | 491 | 0 |
ASACKVEASTMIIPPDYIFLVGPISFSGPYCQGNIVFQLDGMIVAPTDTESWGGGLMWWIEFTKLKGITIQGKGVIDGRGTVWWQQDYLSDYPIDDDFKL IVPLNNSVQERPPMPIRSELNWRMPSIKPTALRFYGSIDVTVTGITIQNSPQCHLKFDNCVQVLVHDVNVSSPGDSPNTDGIHLQNTKDVMIHTTTLACG DDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDSTKACVSNITVRDVVMHNTMTGVRIKTWQGGIGSVKGILFSNIQLTEVQLPIVIDQFYCDHSKCMN HTSAVSVEGVTYEKIRGTYTVKPVHFACSDSFPCIDVQLSGIELKPV |
Full Sequence |
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Protein Sequence Length: 539 Download |
MITRESLRLR SITMMILVTI LVWSTTLETC IARRGRHWRH HHSSSSSLSD SLSSKKPKSH 60 VNNHNNSHSH KSKPKPKPKM KTQPPKSSDG SPVVSQPPQV QQPPPPSPLP LKPVDGDSQE 120 FNVLDFGAKG DGMSDDTEAF EAAWASACKV EASTMIIPPD YIFLVGPISF SGPYCQGNIV 180 FQLDGMIVAP TDTESWGGGL MWWIEFTKLK GITIQGKGVI DGRGTVWWQQ DYLSDYPIDD 240 DFKLIVPLNN SVQERPPMPI RSELNWRMPS IKPTALRFYG SIDVTVTGIT IQNSPQCHLK 300 FDNCVQVLVH DVNVSSPGDS PNTDGIHLQN TKDVMIHTTT LACGDDCISI QTGCSNVYVH 360 NVNCGPGHGI SIGSLGKDST KACVSNITVR DVVMHNTMTG VRIKTWQGGI GSVKGILFSN 420 IQLTEVQLPI VIDQFYCDHS KCMNHTSAVS VEGVTYEKIR GTYTVKPVHF ACSDSFPCID 480 VQLSGIELKP VQLQYHMYDP FCWKTFGELN SATVPPIDCL QIGKPARNGV HSDHDICL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-78 | 121 | 489 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-79 | 148 | 488 | 342 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 3.0e-81 | 119 | 488 | 375 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-86 | 122 | 489 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-103 | 121 | 520 | 407 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF17670.1 | 0 | 1 | 537 | 1 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
GenBank | AAL31197.1 | 0 | 69 | 538 | 2 | 474 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
GenBank | ABK95830.1 | 0 | 1 | 537 | 1 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 1 | 537 | 1 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_564758.2 | 0 | 1 | 538 | 1 | 540 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-19 | 214 | 436 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 4e-19 | 272 | 488 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-19 | 272 | 488 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-19 | 272 | 488 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-19 | 272 | 488 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |