Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 894135 |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 42954 Isoelectric Point: 7.013 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 386 | 0 |
DAACGVADSVVIYVPKGRYLVSGEVRFEGESCRSREITLRIDGTLIGPQDYNLLGKKENWFSFSGVHNVTILGGSFDAKGTTLWNCKANGYNCPEGATTL RFMDSYDVKIKGVLSLNSQLFHIAINRCRNIKIEDVRIIAPDESPNTDGIHIQLSTDIEVQNASIKTGDDCISIGPGTKNLMVDGITCGPGHGISIGSLA KSTEEQGVENVTVKRAVFVRTDNGLRIKSWPRHSNGFVERVRFLGALMVNVSYPILIDQNYCPGDSSCPSQESGIKINDVIYSGIKGTSATKVAIKMDCS EQVPCTGIRMQAINLNYYGEAAETSCTNVSGK |
Full Sequence |
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Protein Sequence Length: 398 Download |
MALFLSFVRV FSIVITIIMS HFGQFDARTS LNVLSFGAKP NGMVDSVKAF SDAWDAACGV 60 ADSVVIYVPK GRYLVSGEVR FEGESCRSRE ITLRIDGTLI GPQDYNLLGK KENWFSFSGV 120 HNVTILGGSF DAKGTTLWNC KANGYNCPEG ATTLRFMDSY DVKIKGVLSL NSQLFHIAIN 180 RCRNIKIEDV RIIAPDESPN TDGIHIQLST DIEVQNASIK TGDDCISIGP GTKNLMVDGI 240 TCGPGHGISI GSLAKSTEEQ GVENVTVKRA VFVRTDNGLR IKSWPRHSNG FVERVRFLGA 300 LMVNVSYPIL IDQNYCPGDS SCPSQESGIK INDVIYSGIK GTSATKVAIK MDCSEQVPCT 360 GIRMQAINLN YYGEAAETSC TNVSGKQLGL VTPSGCV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-79 | 58 | 383 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-83 | 14 | 393 | 386 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-89 | 31 | 396 | 373 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-94 | 5 | 396 | 407 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-129 | 11 | 397 | 388 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK28449.1 | 0 | 21 | 397 | 21 | 397 | unknown [Arabidopsis thaliana] |
RefSeq | NP_176735.1 | 0 | 21 | 397 | 21 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002262690.1 | 0 | 32 | 397 | 33 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 3 | 397 | 4 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 27 | 397 | 19 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-22 | 90 | 383 | 35 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-22 | 90 | 383 | 35 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-22 | 90 | 383 | 35 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-22 | 90 | 383 | 35 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-22 | 90 | 383 | 35 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |