Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 898940 |
Family | PL1 |
Protein Properties | Length: 451 Molecular Weight: 49856.6 Isoelectric Point: 8.9208 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 162 | 369 | 0 |
VIQVEPLWIIFKRDMVIKLKQELIMNSFKTIDARGANVHIANGACITIQFITNVIIHGLHIHDCKRTGNVTVRSSPSHAGFRGTADGDAINIFGSSHIWI DHNSLSHCTDGLVDVVMGSTAITISNNHFTHHDEVMLLGHKDSYTQDKLMQVTVAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWKMYAVGGSANPTINS QGNRYAAP |
Full Sequence |
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Protein Sequence Length: 451 Download |
MASQKLACLC FGVLLIFVVC VLTATNLRNK EISRSRKLKT EDSQSFNSSA MATRLDGVKL 60 NEHAVTDPDK VAHEVSKLIH MSEQNITARR KLGFFSCGNG NLIDDCWRCD RNWNKNRKHL 120 ADCGMGFGSK ANGGRNGSYY VVTDPSDEDV VNPKPGTLRH AVIQVEPLWI IFKRDMVIKL 180 KQELIMNSFK TIDARGANVH IANGACITIQ FITNVIIHGL HIHDCKRTGN VTVRSSPSHA 240 GFRGTADGDA INIFGSSHIW IDHNSLSHCT DGLVDVVMGS TAITISNNHF THHDEVMLLG 300 HKDSYTQDKL MQVTVAYNHF GEGLIQRMPR CRHGYFHVVN NDYTHWKMYA VGGSANPTIN 360 SQGNRYAAPN NRSAKEVTKR LDTKTNEWMK WNWRSEKDLL VNGAFFTPSG EGASADYAQT 420 LSLPAKSASM VDSITASAGA LGCRRGKPCY * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-26 | 188 | 364 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-71 | 181 | 366 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-79 | 175 | 370 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADD62392.1 | 0 | 31 | 449 | 29 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 31 | 449 | 9 | 425 | pectate lyase [Prunus persica] |
EMBL | CAB36835.1 | 0 | 79 | 449 | 4 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
RefSeq | NP_189065.2 | 0 | 2 | 450 | 4 | 452 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_567409.1 | 0 | 36 | 449 | 54 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 101 | 441 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 101 | 441 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-18 | 170 | 366 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.000000000000004 | 179 | 437 | 71 | 345 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.00000000000009 | 249 | 367 | 190 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |