Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 899139 |
Family | GH17 |
Protein Properties | Length: 318 Molecular Weight: 35237.2 Isoelectric Point: 5.943 |
Chromosome | Chromosome/Scaffold: 5 Start: 20409184 End: 20409619 |
Description | Homeodomain-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 30 | 316 | 0 |
LSITNIRIFDTNTDVLNAFRGNRDIGVMVGVKNQDLEALSVSEDAVNTWFVTNIQPYLADVNITFITVGNEIIPGEIGSYVLPVMQSLTNVVKSRSLPIL ISTTVAMTNLGQSYPPSAGDFTPQAREQLTPVLKFLSQTNTPILVNIYPYFAYAADPVNIHLDYAIFNTDAVVVQDGPLGYSNMFDVIFDAFVWAMEKEG IKDLPMVVTETGWPSAGNGNLTTPYIASMYNSNFVKHVESGKGTPKRPNNSINGFLFATFNENQKPAGTEQNFGLYYPTDMKPIYKL |
Full Sequence |
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Protein Sequence Length: 318 Download |
MNRIMPCKHK RHVETTFHLH LKLSTSTSLL SITNIRIFDT NTDVLNAFRG NRDIGVMVGV 60 KNQDLEALSV SEDAVNTWFV TNIQPYLADV NITFITVGNE IIPGEIGSYV LPVMQSLTNV 120 VKSRSLPILI STTVAMTNLG QSYPPSAGDF TPQAREQLTP VLKFLSQTNT PILVNIYPYF 180 AYAADPVNIH LDYAIFNTDA VVVQDGPLGY SNMFDVIFDA FVWAMEKEGI KDLPMVVTET 240 GWPSAGNGNL TTPYIASMYN SNFVKHVESG KGTPKRPNNS INGFLFATFN ENQKPAGTEQ 300 NFGLYYPTDM KPIYKLF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.001 | 234 | 306 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 8.0e-88 | 34 | 316 | 286 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM62473.1 | 0 | 30 | 317 | 58 | 345 | beta-1,3-glucanase bg4 [Arabidopsis thaliana] |
RefSeq | NP_174592.1 | 0 | 30 | 317 | 58 | 335 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
RefSeq | NP_197533.1 | 0 | 30 | 317 | 58 | 345 | BETAG4; catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_197534.1 | 0 | 22 | 317 | 59 | 354 | BG5 (beta-1,3-glucanase 5); glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
RefSeq | NP_197539.1 | 0 | 30 | 317 | 57 | 344 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 32 | 316 | 27 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 32 | 311 | 28 | 309 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 32 | 311 | 28 | 309 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 32 | 311 | 28 | 309 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 32 | 311 | 28 | 309 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR372221 | 131 | 188 | 318 | 0 |
DC899652 | 292 | 34 | 317 | 0 |
EE454654 | 151 | 35 | 185 | 0 |
AV824400 | 119 | 34 | 152 | 0 |
DR165967 | 279 | 35 | 309 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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