Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 902380 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 44278.6 Isoelectric Point: 8.897 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 392 | 0 |
EACQWSNGRSTVYIPPGIFYLRQVTFTGPCKNPITFIIRGTLLAPRNPYAIKQDEWILFKYVDNLTVTGGGLLDGQGSYSWPLNDCNKNTNCRTLAMNIG FAFVKSSKINGLRSINSKMGHFNLFSVEDFNITGVTITAPGDSPNTDGIKIGKSSHMNIFNVTIGTGDDCIAILDGTSNLDISDVRCGPGHGISVGSLGR YKEEKNVQGLTVRNSIINGTTDGLRIKTWAKSVSQISVSNFLYENIQMINVGNPIVIDQQYCPHGQCDSPGKYASHVQIKDVKYNKIWGTSTSKEALKMQ CSKAFPCQDVELSNINLKYVGRDGLVTALCENVGGS |
Full Sequence |
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Protein Sequence Length: 405 Download |
MASRVLLILC LSSLFFFLAA STKEYPSQAK IFDVRNYGAH GDGRRDNAFS FTKAWNEACQ 60 WSNGRSTVYI PPGIFYLRQV TFTGPCKNPI TFIIRGTLLA PRNPYAIKQD EWILFKYVDN 120 LTVTGGGLLD GQGSYSWPLN DCNKNTNCRT LAMNIGFAFV KSSKINGLRS INSKMGHFNL 180 FSVEDFNITG VTITAPGDSP NTDGIKIGKS SHMNIFNVTI GTGDDCIAIL DGTSNLDISD 240 VRCGPGHGIS VGSLGRYKEE KNVQGLTVRN SIINGTTDGL RIKTWAKSVS QISVSNFLYE 300 NIQMINVGNP IVIDQQYCPH GQCDSPGKYA SHVQIKDVKY NKIWGTSTSK EALKMQCSKA 360 FPCQDVELSN INLKYVGRDG LVTALCENVG GSIRGKIVPA NCRI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-82 | 34 | 399 | 373 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-83 | 27 | 402 | 378 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-85 | 26 | 402 | 385 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-100 | 66 | 389 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-124 | 31 | 402 | 374 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_175003.1 | 0 | 9 | 402 | 11 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175004.1 | 0 | 9 | 396 | 11 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175005.1 | 0 | 9 | 396 | 11 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_180874.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 5 | 402 | 7 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 4e-17 | 120 | 350 | 70 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.000000000000001 | 121 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 121 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 121 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000001 | 121 | 389 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |