y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 903792 |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 42619.4 Isoelectric Point: 10.2355 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 382 | 0 |
SLACGSRARAMVYVPRGTYLVKNLVFWGPCKNIITFKNDGTLVAPANYWDIGNSGYWILFAKVNRISVYGGTIDARGAGYWSCRKKGSHCPQGARSISFS WCNNVLLSGLTSFNSQNMHVTVHHSSNVRIQNIRIRAPSGSPNTDGIHIQSSSGVTISGGTIATGDDCIALSQGSRNVWIERVNCGPGHGISIGSLGDYA NEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVGNPVIIDQNYCPNGNGCPRQSSGVKISGVTFANIKGTSTTPIAMKLDCSGSS HCTGLRLQDIKLTYMRRSSASYCRNAHGR |
Full Sequence |
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Protein Sequence Length: 394 Download |
MATNISFPCA IIFFFNVFFF INSSHAMPSF NVQRYGARGD GRTDATKSFL TAWSLACGSR 60 ARAMVYVPRG TYLVKNLVFW GPCKNIITFK NDGTLVAPAN YWDIGNSGYW ILFAKVNRIS 120 VYGGTIDARG AGYWSCRKKG SHCPQGARSI SFSWCNNVLL SGLTSFNSQN MHVTVHHSSN 180 VRIQNIRIRA PSGSPNTDGI HIQSSSGVTI SGGTIATGDD CIALSQGSRN VWIERVNCGP 240 GHGISIGSLG DYANEEGVQN VTVTSSVFTK TQNGVRIKTW ARPSRGFVNN VVFRNLIMNN 300 VGNPVIIDQN YCPNGNGCPR QSSGVKISGV TFANIKGTST TPIAMKLDCS GSSHCTGLRL 360 QDIKLTYMRR SSASYCRNAH GRASGVMVPR NCM* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-80 | 23 | 390 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-85 | 57 | 384 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-89 | 30 | 393 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-101 | 25 | 392 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-143 | 23 | 393 | 372 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181916.1 | 0 | 1 | 393 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 7 | 393 | 6 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331633.1 | 0 | 7 | 393 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 11 | 393 | 10 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529095.1 | 0 | 3 | 393 | 2 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-22 | 121 | 366 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-20 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-20 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-20 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-20 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |