y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 903793 |
Family | GH28 |
Protein Properties | Length: 388 Molecular Weight: 41422.4 Isoelectric Point: 10.1533 |
Chromosome | Chromosome/Scaffold: 3 Start: 3686032 End: 3686867 |
Description | glutathione S-transferase TAU 8 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 375 | 0 |
WQAACRSAAAVTVTVPRGSFLLKPVEFRGPCRSRITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISINGGTLDARGASFWACRKSGKSCPVGARSMTF NWANDVVVTGLTSINSQATHLVINSCNNVIVRKVKLVAPDQSPNTDGLHVQGSAGVTVTDSTFQTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRD SKEAGVENITLINSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPIIVDQNYCPANQGCPKQGSGVKISQVVYRNIQGTSRTQQALTFDCSRS NPCQAIRLHDIKLMFNGRSATATCKNIKG |
Full Sequence |
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Protein Sequence Length: 388 Download |
MDNNKLVAVL VILLMKSSTA ANNYNVVSFG AKPDGRTDST EAFLGAWQAA CRSAAAVTVT 60 VPRGSFLLKP VEFRGPCRSR ITFQIYGTIV APSDYRGLGN SGYWILFVKV NRISINGGTL 120 DARGASFWAC RKSGKSCPVG ARSMTFNWAN DVVVTGLTSI NSQATHLVIN SCNNVIVRKV 180 KLVAPDQSPN TDGLHVQGSA GVTVTDSTFQ TGDDCISIGP GTRNLYMSKL NCGPGHGISI 240 GSLGRDSKEA GVENITLINS VFSGSDNGVR IKTWARQSTG FVRNVLFQNL IMKNVQNPII 300 VDQNYCPANQ GCPKQGSGVK ISQVVYRNIQ GTSRTQQALT FDCSRSNPCQ AIRLHDIKLM 360 FNGRSATATC KNIKGVKAGV VMPQGCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-94 | 51 | 374 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 9.0e-102 | 26 | 387 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-102 | 1 | 384 | 391 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 6.0e-106 | 6 | 386 | 398 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-179 | 6 | 387 | 383 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181917.1 | 0 | 1 | 387 | 1 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002309713.1 | 0 | 5 | 387 | 3 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 5 | 387 | 3 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529097.1 | 0 | 8 | 387 | 10 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 4 | 387 | 3 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-19 | 118 | 359 | 117 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 2e-18 | 117 | 373 | 81 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 2e-18 | 117 | 373 | 81 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 2e-18 | 117 | 373 | 81 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 4e-18 | 37 | 373 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |