| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 904106 |
| Family | GT8 |
| Protein Properties | Length: 284 Molecular Weight: 33175.4 Isoelectric Point: 7.7817 |
| Chromosome | Chromosome/Scaffold: 3 Start: 4908113 End: 4908541 |
| Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT8 | 107 | 254 | 8.1e-29 |
| PNYKSMLNLLRFYISIIFPKLEKILLLDDDDVVVQKDLTPLWSIDLKGKVNGAVETCGVTFHRLDTYLNFSDQHISDNSERMEKEQHNRSLSFLAKTAGL IMFYNLTLPLERKWHLLGLGYDKEIDEKEIANSAVIHFNGPLKPWKEL | |||
| Full Sequence |
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| Protein Sequence Length: 284 Download |
| MAGRSERRSR FRDLRRCSFP VIVAFLCFLA SSTFLSQLHI YFTSTHRLIC TAENSCLCWL 60 PEHYQMRLTL EYYLLPAPMR NFPRRENLEN PNHYHYALFS DNVLAYPNYK SMLNLLRFYI 120 SIIFPKLEKI LLLDDDDVVV QKDLTPLWSI DLKGKVNGAV ETCGVTFHRL DTYLNFSDQH 180 ISDNSERMEK EQHNRSLSFL AKTAGLIMFY NLTLPLERKW HLLGLGYDKE IDEKEIANSA 240 VIHFNGPLKP WKELGVTKYQ PYFVGFVCLQ NMADILSCYT FLL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02910 | PLN02910 | 2.0e-5 | 24 | 105 | 82 | + polygalacturonate 4-alpha-galacturonosyltransferase | ||
| PLN02829 | PLN02829 | 3.0e-10 | 66 | 105 | 40 | + Probable galacturonosyltransferase | ||
| PLN02742 | PLN02742 | 1.0e-38 | 107 | 267 | 190 | + Probable galacturonosyltransferase | ||
| PLN02910 | PLN02910 | 3.0e-44 | 107 | 271 | 194 | + polygalacturonate 4-alpha-galacturonosyltransferase | ||
| PLN02829 | PLN02829 | 1.0e-46 | 100 | 267 | 199 | + Probable galacturonosyltransferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM18739.1 | 0 | 107 | 279 | 408 | 607 | AC092548_17 hypothetical protein [Oryza sativa Japonica Group] |
| GenBank | EAZ15816.1 | 0 | 107 | 279 | 487 | 686 | hypothetical protein OsJ_31235 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064438.1 | 0 | 107 | 279 | 301 | 500 | Os10g0363100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001131608.1 | 0 | 107 | 267 | 26 | 214 | hypothetical protein LOC100192958 [Zea mays] |
| RefSeq | XP_001785716.1 | 0 | 107 | 267 | 26 | 214 | predicted protein [Physcomitrella patens subsp. patens] |
| Transmembrane Domains | |||||
|---|---|---|---|---|---|
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| Start | End | ||||
| 21 | 43 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FE706414 | 206 | 97 | 271 | 3e-37 |
| EX683722 | 199 | 100 | 267 | 4e-37 |
| GT814022 | 190 | 107 | 267 | 6e-37 |
| EC920893 | 203 | 100 | 271 | 1e-36 |
| EX688093 | 199 | 100 | 267 | 1e-36 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Arabidopsis lyrata | 904110 | 904112 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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