Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 906150 |
Family | GH28 |
Protein Properties | Length: 444 Molecular Weight: 48593.9 Isoelectric Point: 9.8735 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 86 | 395 | 0 |
GDGGSQLIVPKGKWLTGSFNLTSHFTLHIKEGATILASQDESEYPMLQVLPSYRDTRFASLIYGSNLTDVVIAGDKGTINGQGKSWWAKYRNGGFKSIQR PMLIEIQSSENVQISNINLIDSPMWSIHPVYCRNVIIKGVKISNPIDSANTDGINPVGRPIEMLLIRRFSCIAPNGAGIAMGSEMSGGIKGVRMEDVTLH NTQSAIKIETAMGRGGYVQNVWARRFTIKTSKYVFLMTGSHKPIPRDGNIPKAKPVVTNINFRDITGENVSTSAKLEGMKSNPFTGVCMSNVSISLSPNA SKQQFHCMDI |
Full Sequence |
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Protein Sequence Length: 444 Download |
MIRTSFCILV VLVIFDFPVI ESQSLKSDGT HSARFPTPSR DFVEHAALNC RRQSAILTDF 60 GAIGDGKTSN TKAFREAIRN LTSRAGDGGS QLIVPKGKWL TGSFNLTSHF TLHIKEGATI 120 LASQDESEYP MLQVLPSYRD TRFASLIYGS NLTDVVIAGD KGTINGQGKS WWAKYRNGGF 180 KSIQRPMLIE IQSSENVQIS NINLIDSPMW SIHPVYCRNV IIKGVKISNP IDSANTDGIN 240 PVGRPIEMLL IRRFSCIAPN GAGIAMGSEM SGGIKGVRME DVTLHNTQSA IKIETAMGRG 300 GYVQNVWARR FTIKTSKYVF LMTGSHKPIP RDGNIPKAKP VVTNINFRDI TGENVSTSAK 360 LEGMKSNPFT GVCMSNVSIS LSPNASKQQF HCMDIVGESR SVKPQPCSLL PDKHPGVRFE 420 CTFPTEKIPI ENVVLKRCAG HVF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 7.0e-18 | 57 | 404 | 388 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 7.0e-19 | 57 | 379 | 353 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-19 | 59 | 407 | 395 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-24 | 90 | 387 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 5.0e-39 | 57 | 386 | 397 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC63679.1 | 0 | 1 | 440 | 1 | 466 | putative polygalacturonase [Arabidopsis thaliana] |
GenBank | ABK28510.1 | 0 | 1 | 440 | 12 | 477 | unknown [Arabidopsis thaliana] |
RefSeq | NP_179968.2 | 0 | 1 | 440 | 12 | 477 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_190464.1 | 0 | 1 | 438 | 1 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002305262.1 | 0 | 42 | 440 | 1 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7e-32 | 43 | 380 | 10 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7e-32 | 43 | 380 | 10 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7e-32 | 43 | 380 | 10 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7e-32 | 43 | 380 | 10 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.00000001 | 46 | 147 | 148 | 245 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |