| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 906271 |
| Family | GH28 |
| Protein Properties | Length: 472 Molecular Weight: 51936.8 Isoelectric Point: 6.936 |
| Chromosome | Chromosome/Scaffold: 3 Start: 19850155 End: 19850639 |
| Description | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 73 | 422 | 0 |
| SDKGGAKLFVPAGQWLTGSFDLISHLTLWLDSGATILGSTSSENWPVVDPLPSYGRGRELPGRRHRSLIYGQNLTDVVITGENGTIDGQGSVWWDWFRNG ELNYTRPHLVELMNSTGLIISNLTFLNSPFWNIHPVYCRDVVVKNLTILAPLESPNTDGVDPDSSTNVCIEDCYIVTRDDLVSIKTGWDEYGISYARPSS KIKINRLTGQTTSSSGIAIGSEMSGGVSEIYIKDLHLFNSNTGIRIKTSPGRGGYVRNVHILNVKLDNVKKAIRFTGKYGEHPDKNFDPKALPAIEKITF ENVNGDGIGVAGLLEGIEGDEFKNICFLNVTLRVKKNSKKSPWECSNVRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 472 Download |
| MKRSFLLLYV LLVHAFYGAL CSVGGSLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK 60 AFQNALFYPN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL WLDSGATILG STSSENWPVV 120 DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGSVWWDWFR NGELNYTRPH 180 LVELMNSTGL IISNLTFLNS PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV 240 CIEDCYIVTR DDLVSIKTGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS 300 EIYIKDLHLF NSNTGIRIKT SPGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDKNFD 360 PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDEFKNICFL NVTLRVKKNS KKSPWECSNV 420 RGYSQWVSPG ITCDSLKESI FPEHRSDCFG LSENNLEISS GLSRSPWLLS W* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 5.0e-29 | 5 | 421 | 438 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 8.0e-30 | 35 | 377 | 350 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-34 | 41 | 441 | 422 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-36 | 141 | 377 | 247 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-59 | 43 | 342 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB71871.1 | 0 | 1 | 471 | 1 | 470 | putative protein [Arabidopsis thaliana] |
| EMBL | CBI37055.1 | 0 | 16 | 471 | 17 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_567126.1 | 0 | 1 | 471 | 1 | 471 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002301554.1 | 0 | 1 | 449 | 1 | 444 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 23 | 471 | 34 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.99993e-41 | 41 | 399 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.99993e-41 | 41 | 399 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.99993e-41 | 41 | 399 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.99993e-41 | 41 | 399 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 2e-22 | 87 | 420 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
