y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 912531 |
Family | PL4 |
Protein Properties | Length: 666 Molecular Weight: 75642.4 Isoelectric Point: 10.0191 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 60 | 647 | 0 |
HNQVVVDNGIIQVSFSSPAGLITGIKYNGFNNVLNDQIENRGLVGEKFNIVNQTSEHVEISFSRTWNISQHTSGAPLNVDKRYIIRSGVSGVYMYAVLER LKGWPDVNMDQTRIVFKLNTTKFDYMAISDGRQKIMPSATDRDIKTGRASPLAYKEAVHLINPQNHILKGQVDDKYMYSMENKDNKVHGWISADQRVGFW MITPSDEFRSCGPIKQDLTSHVGPTILSMFTSVHYAGVDINTIYKSKEPWRKMFGPVFVYLNSASSRNLLWTDAKRQMVSEVQSWPYDFVKSVDYPLHHQ RGIVKGRIFVMERYNKSETNLFGKFAFVGLALPGEAGSWQTENKGYQFWTRADKVGMFTIANVRPGKYSLYAWVSGFIGDYKYERDITITPGRVIDVGRI VYEPPRNGPTLWEIGEPDRTAAEFYIPDPDPTLLTKLYLNYSNPQDRFRQYGLWDRYSVLYPRKDLIFTTRVSDFKKDWFYAHVNRKAGNGTYKATTWQI KFNLKAVIQTRIYTLRIALAAATTTDLVVWVNQANSKPLFITGLIGRDNAIARHGIHGLYKLYNIDVHGKLLRVGNNTIFLTHGRNSD |
Full Sequence |
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Protein Sequence Length: 666 Download |
MDKELENGSP GVKVGRVMTQ VFVLIFLLQG VRSTTSLNNL NVTKPGQKQS PPVTLRKVGH 60 NQVVVDNGII QVSFSSPAGL ITGIKYNGFN NVLNDQIENR GLVGEKFNIV NQTSEHVEIS 120 FSRTWNISQH TSGAPLNVDK RYIIRSGVSG VYMYAVLERL KGWPDVNMDQ TRIVFKLNTT 180 KFDYMAISDG RQKIMPSATD RDIKTGRASP LAYKEAVHLI NPQNHILKGQ VDDKYMYSME 240 NKDNKVHGWI SADQRVGFWM ITPSDEFRSC GPIKQDLTSH VGPTILSMFT SVHYAGVDIN 300 TIYKSKEPWR KMFGPVFVYL NSASSRNLLW TDAKRQMVSE VQSWPYDFVK SVDYPLHHQR 360 GIVKGRIFVM ERYNKSETNL FGKFAFVGLA LPGEAGSWQT ENKGYQFWTR ADKVGMFTIA 420 NVRPGKYSLY AWVSGFIGDY KYERDITITP GRVIDVGRIV YEPPRNGPTL WEIGEPDRTA 480 AEFYIPDPDP TLLTKLYLNY SNPQDRFRQY GLWDRYSVLY PRKDLIFTTR VSDFKKDWFY 540 AHVNRKAGNG TYKATTWQIK FNLKAVIQTR IYTLRIALAA ATTTDLVVWV NQANSKPLFI 600 TGLIGRDNAI ARHGIHGLYK LYNIDVHGKL LRVGNNTIFL THGRNSDSFS GVMYDYLRLE 660 GPSGV* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 9.0e-30 | 359 | 459 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-34 | 471 | 660 | 194 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 5.0e-66 | 61 | 325 | 276 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-78 | 24 | 231 | 227 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 5 | 662 | 1 | 674 | At2g22620 [Arabidopsis thaliana] |
EMBL | CAA76417.1 | 0 | 231 | 665 | 1 | 435 | MYST1 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 5 | 662 | 1 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | NP_195508.2 | 0 | 5 | 665 | 1 | 678 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002527245.1 | 0 | 63 | 663 | 2 | 619 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR451984 | 269 | 253 | 520 | 0 |
GR312932 | 285 | 382 | 665 | 0 |
EV572092 | 272 | 287 | 557 | 0 |
CX191140 | 260 | 311 | 569 | 0 |
GR455539 | 270 | 113 | 382 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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