Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 912805 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 42192.4 Isoelectric Point: 5.1668 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 378 | 0 |
GDGDIKTLLIPSDKTFLLQPTVFQGPCKSSSIKVQLDGAIVAPSDKVAWSDPISRMWIKFSTVSGLTIVGSGTIDSRGSSFWELNLKASQRPTALHISKC DNLRINGITSIDSPKNHISIKTCNTVAISNINLFAPETSPNTDGIDISDSTNINIFDSTIQTGDDCIAINSGSSNINITGINCGPGHGISVGSLGAGGAE AKVSDVHVTHCTFNQTTNGARIKTWLGGQGYARNISFTDITLINTKNPIIIDQQYIDKGKLDGEESSVAISNVKYVDFRGTSSNKNAITLKCSETTHCID VVMDGIDITMANGGKPKVNCQYVDGE |
Full Sequence |
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Protein Sequence Length: 396 Download |
MKTILDISIL INFLCFGIVY GQNYNVLNFD AKGDGQTDDS KAFLQAWTAA CGGDGDIKTL 60 LIPSDKTFLL QPTVFQGPCK SSSIKVQLDG AIVAPSDKVA WSDPISRMWI KFSTVSGLTI 120 VGSGTIDSRG SSFWELNLKA SQRPTALHIS KCDNLRINGI TSIDSPKNHI SIKTCNTVAI 180 SNINLFAPET SPNTDGIDIS DSTNINIFDS TIQTGDDCIA INSGSSNINI TGINCGPGHG 240 ISVGSLGAGG AEAKVSDVHV THCTFNQTTN GARIKTWLGG QGYARNISFT DITLINTKNP 300 IIIDQQYIDK GKLDGEESSV AISNVKYVDF RGTSSNKNAI TLKCSETTHC IDVVMDGIDI 360 TMANGGKPKV NCQYVDGESS DTDLMRDCFK NNTSS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 5.0e-77 | 24 | 367 | 352 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-77 | 6 | 367 | 370 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-93 | 26 | 394 | 376 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-98 | 25 | 380 | 363 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 0 | 1 | 395 | 396 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC79138.1 | 0 | 1 | 391 | 1 | 381 | putative polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA20037.1 | 0 | 11 | 395 | 1 | 374 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 1 | 395 | 1 | 394 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_198105.2 | 0 | 2 | 394 | 31 | 414 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199297.1 | 0 | 1 | 390 | 1 | 380 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-23 | 101 | 375 | 58 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-23 | 101 | 375 | 58 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-23 | 101 | 375 | 58 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-23 | 101 | 375 | 58 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-23 | 101 | 375 | 58 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 258 | 90 | 344 | 0 |
CX192293 | 253 | 60 | 312 | 0 |
FD553309 | 156 | 237 | 391 | 0 |
DY281549 | 320 | 24 | 337 | 0 |
CV538127 | 233 | 51 | 280 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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