| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 913356 |
| Family | CBM43 |
| Protein Properties | Length: 485 Molecular Weight: 52827.4 Isoelectric Point: 6.0517 |
| Chromosome | Chromosome/Scaffold: 1 Start: 16802733 End: 16806497 |
| Description | Argonaute family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 365 | 447 | 1.1e-24 |
| WCILAPNANLQDPQLGPSVSYACDHADCTSLGYGSSCGNLNLAQNVSYAFNSYYQVSNQLDSACKFPGLSIVSTRDPSVGSCK | |||
| GH17 | 27 | 345 | 0 |
| IGVNWGSQARHPLPPATVVRLLRDNGIQKVKLFEADSAILKALSRSGIQVMVGIPNDLLAPLAGSVAAAERWVSQNVSAHVSSNGVDIRYVAVGNEPFLK AFNGTFESITLPALQNIQSAIIKAGLATQVKVTVPLNADVYQSASNLPSDGDFRPEIRDLMLNIVKFLSDNQAPFTINIYPFISLYNDPNFPVEFAFFDG TGTPINDNGRIYDNVLDANYDTLVWSLQKNGFGNLTIIVGEVGWPTDGDKNANMMYARRYNQGFMNRQKANKGTPMRPGAMDAYLFGLIDEDAKSIQPGN FERHWGIFYIDGQPKYQLS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 485 Download |
| MLSKGVFAVF FVTTLLYGSL LIEVEGIGVN WGSQARHPLP PATVVRLLRD NGIQKVKLFE 60 ADSAILKALS RSGIQVMVGI PNDLLAPLAG SVAAAERWVS QNVSAHVSSN GVDIRYVAVG 120 NEPFLKAFNG TFESITLPAL QNIQSAIIKA GLATQVKVTV PLNADVYQSA SNLPSDGDFR 180 PEIRDLMLNI VKFLSDNQAP FTINIYPFIS LYNDPNFPVE FAFFDGTGTP INDNGRIYDN 240 VLDANYDTLV WSLQKNGFGN LTIIVGEVGW PTDGDKNANM MYARRYNQGF MNRQKANKGT 300 PMRPGAMDAY LFGLIDEDAK SIQPGNFERH WGIFYIDGQP KYQLSLGNGN GLIPAKDVHY 360 LAKKWCILAP NANLQDPQLG PSVSYACDHA DCTSLGYGSS CGNLNLAQNV SYAFNSYYQV 420 SNQLDSACKF PGLSIVSTRD PSVGSCKFKI MIKSEDASEA SAMMPLTRST AMLLLFSICL 480 YIIL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0002 | 259 | 337 | 80 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 8.0e-15 | 364 | 433 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 7.0e-29 | 364 | 448 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-76 | 27 | 345 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_194843.1 | 0 | 1 | 484 | 1 | 484 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002324127.1 | 0 | 23 | 455 | 37 | 473 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330836.1 | 0 | 20 | 476 | 31 | 491 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528007.1 | 0 | 22 | 480 | 24 | 489 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| RefSeq | XP_002530371.1 | 0 | 24 | 480 | 20 | 482 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 27 | 346 | 1 | 306 | X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta From Pseudomonas Aeruginosa |
| PDB | 1aq0_B | 0 | 27 | 346 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 27 | 346 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 2cyg_A | 0 | 27 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 27 | 346 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
