| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 914728 |
| Family | AA3 |
| Protein Properties | Length: 726 Molecular Weight: 79544 Isoelectric Point: 7.5856 |
| Chromosome | Chromosome/Scaffold: 1 Start: 29605860 End: 29608100 |
| Description | CBS domain-containing protein / transporter associated domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| AA3 | 200 | 710 | 2.8026e-45 |
| FTVSTQKRNTNGSSISDLVMTIRCDAVVVGSGSGGGVVAGVLAKAGYKVLVVESGTYYARSKLSLLEGQAMDDMYLSGGLLATSDTNVVILAGSTVGGGS TINWSASIKTPEHVIKEWAEKSKLEMFGSDLYREAMDVVCERMGVQCGFVEEGFNNEILRKGCEELGLPVKNIPRNAASDHYCGFCCLGCKKGQKQGTSE TWLVDLVESGNGLILPGCEAMEVLYDCGRGKKKKATGVAFAYGEEIYVVESKTTVVACGALRTPHLLKRSGLRNGNIGRNLCLHPVVMAWGWFPDEDKWP EKKKKSYEGGIMTAMSSVVNAETHSSYGEMVIQTPALHPGMFSGIIPWTSSKDFKTRMLKFSRTAHIFALLRDKGTGTINSKSYIDYNLNDEDEESLKSG LDRVLKILAAAGAEEIGTHHSEGRSLNVRTASTLEIERFVREESSKPLKDLSGQICSAHQMGSCRMGIRPEESAVRPTGETWEVEGLFVADTSVFPTALG VNPMVTVQSIA | |||
| Full Sequence |
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| Protein Sequence Length: 726 Download |
| MESLVAICDT FISSIDGSGV GHVDDCVAGY FSASASQTGT PDRAARLMSE RLHHPKKWIL 60 RAGLWLLSTW IGTLILCGRR SFTGQFPYFR RFCRLPEKQR EEILLNWSSS YFSLLRMFFR 120 SIKLITAFVF FTQVDENGRN LAWKAIGYDG PSSDHSDHEV ELNEKMQKKP EEIFGPLYNG 180 IIDLQSPREA VAKKLTGHGF TVSTQKRNTN GSSISDLVMT IRCDAVVVGS GSGGGVVAGV 240 LAKAGYKVLV VESGTYYARS KLSLLEGQAM DDMYLSGGLL ATSDTNVVIL AGSTVGGGST 300 INWSASIKTP EHVIKEWAEK SKLEMFGSDL YREAMDVVCE RMGVQCGFVE EGFNNEILRK 360 GCEELGLPVK NIPRNAASDH YCGFCCLGCK KGQKQGTSET WLVDLVESGN GLILPGCEAM 420 EVLYDCGRGK KKKATGVAFA YGEEIYVVES KTTVVACGAL RTPHLLKRSG LRNGNIGRNL 480 CLHPVVMAWG WFPDEDKWPE KKKKSYEGGI MTAMSSVVNA ETHSSYGEMV IQTPALHPGM 540 FSGIIPWTSS KDFKTRMLKF SRTAHIFALL RDKGTGTINS KSYIDYNLND EDEESLKSGL 600 DRVLKILAAA GAEEIGTHHS EGRSLNVRTA STLEIERFVR EESSKPLKDL SGQICSAHQM 660 GSCRMGIRPE ESAVRPTGET WEVEGLFVAD TSVFPTALGV NPMVTVQSIA YCIGLNVVDV 720 LKRKK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 0.001 | 634 | 696 | 64 | + choline dehydrogenase; Validated | ||
| TIGR03970 | Rv0697 | 0.0009 | 622 | 710 | 90 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| pfam05199 | GMC_oxred_C | 4.0e-23 | 571 | 713 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 5.0e-33 | 241 | 711 | 541 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam00732 | GMC_oxred_N | 2.0e-81 | 270 | 485 | 222 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA18625.1 | 5e-16 | 1 | 43 | 43 | 85 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA18625.1 | 0 | 133 | 725 | 85 | 678 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_193673.2 | 0 | 1 | 725 | 1 | 726 | alcohol oxidase-related [Arabidopsis thaliana] |
| RefSeq | XP_002269629.1 | 0 | 1 | 725 | 40 | 787 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002328753.1 | 0 | 1 | 725 | 1 | 745 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ljp_B | 0.0000000001 | 358 | 709 | 170 | 518 | A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant |
| PDB | 3ljp_A | 0.0000000001 | 358 | 709 | 170 | 518 | A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant |
| PDB | 2jbv_B | 0.0000000003 | 358 | 709 | 170 | 518 | A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism |
| PDB | 2jbv_A | 0.0000000003 | 358 | 709 | 170 | 518 | A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism |
| PDB | 3nne_H | 0.0000000003 | 358 | 709 | 170 | 518 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DC883850 | 463 | 270 | 725 | 0 |
| BX836801 | 307 | 364 | 670 | 0 |
| HO794753 | 742 | 1 | 721 | 0 |
| BX841281 | 298 | 29 | 325 | 0 |
| BX836801 | 51 | 671 | 721 | 9e-21 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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