| Basic Information | |
|---|---|
| Species | Arabidopsis lyrata |
| Cazyme ID | 917162 |
| Family | AA7 |
| Protein Properties | Length: 537 Molecular Weight: 60270.9 Isoelectric Point: 6.4511 |
| Chromosome | Chromosome/Scaffold: 8 Start: 16735536 End: 16737962 |
| Description | DegP protease 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 77 | 527 | 0 |
| PKPVSIITPVKASDVQTVIRCARLHGIHVRTRSAGHGWEGQSYIAYNKPFVVIDLRNLRSISLNVDDRTGWVQTGATTGELYFEIGKTTKSLAFPASIHP TVGVGGQFSGGGYGTLLRKYGLAADNIIDALVVDARGRILDRQAMGEDYFWAIRGGGGSSFGVVLSWKIKLVDVPSTVTVFKVQKTSEKEAVRIINKWQY VAAKVPNDLFISATLERSDKNLVHALFTGLYLGPVNDLLALMEEKFPELNLEMEDCTEMSWVESVLWFADFPKGESLGVLANRKRTSLSFKGKDDFVQEP IPEAAIQELWRRLEAPEARLAKVILTPFGGKMSEIAEHETPFPHREGNLYEIQYLAFWREEEDKNKMETEKYLKWVESVYNLMTPYVSKSPRGAYVNFMD LDLGMYLGKEETKYEEGKSWGVKYFKNNFERLVRVKTSVDPTDFFCDEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 537 Download |
| MEFSNSLLSL LLFSLCVSPL SALVSAHNHE DFLKCLSHRI NDNTVVSKVI HTSKGSSFCS 60 ILDSSIQNPR FSVPETPKPV SIITPVKASD VQTVIRCARL HGIHVRTRSA GHGWEGQSYI 120 AYNKPFVVID LRNLRSISLN VDDRTGWVQT GATTGELYFE IGKTTKSLAF PASIHPTVGV 180 GGQFSGGGYG TLLRKYGLAA DNIIDALVVD ARGRILDRQA MGEDYFWAIR GGGGSSFGVV 240 LSWKIKLVDV PSTVTVFKVQ KTSEKEAVRI INKWQYVAAK VPNDLFISAT LERSDKNLVH 300 ALFTGLYLGP VNDLLALMEE KFPELNLEME DCTEMSWVES VLWFADFPKG ESLGVLANRK 360 RTSLSFKGKD DFVQEPIPEA AIQELWRRLE APEARLAKVI LTPFGGKMSE IAEHETPFPH 420 REGNLYEIQY LAFWREEEDK NKMETEKYLK WVESVYNLMT PYVSKSPRGA YVNFMDLDLG 480 MYLGKEETKY EEGKSWGVKY FKNNFERLVR VKTSVDPTDF FCDEQSIPIL KSVDDI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 3.0e-14 | 79 | 530 | 471 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 7.0e-16 | 470 | 528 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 1.0e-19 | 79 | 217 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO29955.1 | 0 | 40 | 533 | 1 | 494 | berberine bridge enzyme-like protein [Arabidopsis thaliana] |
| DDBJ | BAE99575.1 | 0 | 28 | 536 | 11 | 513 | berberine bridge enzyme-like protein [Arabidopsis thaliana] |
| RefSeq | NP_193814.1 | 0 | 1 | 536 | 1 | 532 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_199254.1 | 0 | 1 | 536 | 1 | 535 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_199257.1 | 0 | 1 | 533 | 1 | 532 | FAD-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 26 | 530 | 1 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 29 | 530 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 29 | 530 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 30 | 530 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 30 | 530 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
