Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 918231 |
Family | AA3 |
Protein Properties | Length: 528 Molecular Weight: 58318.7 Isoelectric Point: 6.918 |
Chromosome | Chromosome/Scaffold: 8 Start: 21465774 End: 21469783 |
Description | RNA-binding KH domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 11 | 512 | 0 |
ARFDYIVIGGGTSGCALAATLSQNANVLVLERGGSPYDNPAATDIEKFANTLLNTTPKAWSQLFISEDGVYNHRARVLGGDSVLNAGFYSRAEDYYVEKS EWEMEEVEAAYEWVEKKLVFNCDHIVGTKIGGTIFDPAGHRHSAANLLEYANPDTIVVYLHALVHKILFTTKGRSRPEACGVIYQDANGVFHKAKLAKNA MSEVILCAGAIGSPQPLMLSGVGPRAHLEAHGVHPMVLDQPMVGQGMGDNPMNLVLVPSPQLVELSLVEVVGITKFYDFIEGGSGLSLSHNLTRRFFDGN LNILNETLSTQSIVDFFKSLDLPLNMMENAGLIFHKVDGPVSRGYLELRNKNPDENPSVTFNYYQEPEDLERCVKGLNTIIKVIKSKAFSKYKYPNETVR GLLNRTLSLPINLRPKHISSKSNLTQFCIDTVMTIWHYHGGCQVGRVVDKNYKVLGIDALRVIDGSTFLKSPGTNPQATVMMLGRYMGQKILRERAAFRE KD |
Full Sequence |
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Protein Sequence Length: 528 Download |
MKDATLAPTY ARFDYIVIGG GTSGCALAAT LSQNANVLVL ERGGSPYDNP AATDIEKFAN 60 TLLNTTPKAW SQLFISEDGV YNHRARVLGG DSVLNAGFYS RAEDYYVEKS EWEMEEVEAA 120 YEWVEKKLVF NCDHIVGTKI GGTIFDPAGH RHSAANLLEY ANPDTIVVYL HALVHKILFT 180 TKGRSRPEAC GVIYQDANGV FHKAKLAKNA MSEVILCAGA IGSPQPLMLS GVGPRAHLEA 240 HGVHPMVLDQ PMVGQGMGDN PMNLVLVPSP QLVELSLVEV VGITKFYDFI EGGSGLSLSH 300 NLTRRFFDGN LNILNETLST QSIVDFFKSL DLPLNMMENA GLIFHKVDGP VSRGYLELRN 360 KNPDENPSVT FNYYQEPEDL ERCVKGLNTI IKVIKSKAFS KYKYPNETVR GLLNRTLSLP 420 INLRPKHISS KSNLTQFCID TVMTIWHYHG GCQVGRVVDK NYKVLGIDAL RVIDGSTFLK 480 SPGTNPQATV MMLGRYMGQK ILRERAAFRE KDYDYLIVSP TKDETSI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG2303 | BetA | 4.0e-10 | 13 | 101 | 99 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
TIGR01810 | betA | 1.0e-23 | 149 | 506 | 384 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
pfam05199 | GMC_oxred_C | 2.0e-25 | 350 | 494 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
COG2303 | BetA | 4.0e-29 | 149 | 507 | 380 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 13 | 505 | 532 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB11043.1 | 0 | 1 | 495 | 34 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB87405.1 | 0 | 1 | 495 | 34 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
RefSeq | NP_001119417.1 | 0 | 1 | 512 | 1 | 550 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_200008.1 | 0 | 1 | 512 | 34 | 583 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_567032.1 | 0 | 1 | 512 | 34 | 574 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 0 | 3 | 516 | 17 | 528 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 0 | 3 | 516 | 17 | 528 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 0 | 3 | 507 | 17 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 3 | 507 | 17 | 519 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 3 | 507 | 17 | 519 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO796743 | 527 | 14 | 505 | 0 |
EX035172 | 248 | 265 | 511 | 0 |
CX666126 | 296 | 212 | 507 | 0 |
EX032497 | 237 | 276 | 511 | 0 |
HO799688 | 304 | 218 | 515 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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