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Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 919476 |
Family | GT47 |
Protein Properties | Length: 514 Molecular Weight: 59164.1 Isoelectric Point: 8.7189 |
Chromosome | Chromosome/Scaffold: 1 Start: 2750246 End: 2750539 |
Description | |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 114 | 454 | 0 |
CDSGRVFVYDMPKIFNEVILQQCDNLNPWSSRCDALSNDGFGKEATSLSNVIPKDLVQSWFWTDQFVTEIIFHNRILNHRCRTLDPQSATAFYIPFYAGL AVGQYLWSNYAAADRDRHCKMMTQWVKDQPYWNRSNGWDHFITMGRITWDFRRSKDEDWGSNCIYIPGMRNITRLLIERNSWDHFDVGVPYPTGFHPRTD SDVVNWQDFVRNRRRETLFCFAGAPRAGIVNDFRGLLLRHCEESRGKCRTVDCTVGKCSNGSSAILETFLGSDFCLQPRGDSFTRRSIFDCMLAGSIPVF FWRRSAYMQYQWFLPDKPDSYSVFIDRNGIKNGTTSIKEVL |
Full Sequence |
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Protein Sequence Length: 514 Download |
MLPVSNPSSP EHLLKKSRTP DTSTAIDRKS SFNSLNSAVN RSSYITASRS HCTWLIISLL 60 SLQLILFLTL RSIPFPHRHI PENFPSPVAV ATTVTVISAA SSNPPLSSSS DERCDSGRVF 120 VYDMPKIFNE VILQQCDNLN PWSSRCDALS NDGFGKEATS LSNVIPKDLV QSWFWTDQFV 180 TEIIFHNRIL NHRCRTLDPQ SATAFYIPFY AGLAVGQYLW SNYAAADRDR HCKMMTQWVK 240 DQPYWNRSNG WDHFITMGRI TWDFRRSKDE DWGSNCIYIP GMRNITRLLI ERNSWDHFDV 300 GVPYPTGFHP RTDSDVVNWQ DFVRNRRRET LFCFAGAPRA GIVNDFRGLL LRHCEESRGK 360 CRTVDCTVGK CSNGSSAILE TFLGSDFCLQ PRGDSFTRRS IFDCMLAGSI PVFFWRRSAY 420 MQYQWFLPDK PDSYSVFIDR NGIKNGTTSI KEVLGRYSKE DVRKMRERVI DLIPNFVYAK 480 SPNGLETFKD AFDVAIDGVF RRFKEQENWY KWR* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-57 | 113 | 454 | 357 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA97186.1 | 0 | 1 | 511 | 1 | 515 | unnamed protein product [Arabidopsis thaliana] |
RefSeq | NP_201028.1 | 0 | 1 | 513 | 1 | 517 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002270309.1 | 0 | 1 | 512 | 1 | 489 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318866.1 | 0 | 1 | 512 | 1 | 512 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002510893.1 | 0 | 1 | 512 | 1 | 497 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY290373 | 373 | 124 | 495 | 0 |
BU238022 | 260 | 255 | 514 | 0 |
DY267021 | 343 | 153 | 495 | 0 |
EX091911 | 261 | 225 | 485 | 0 |
BU238022 | 20 | 239 | 258 | 0.026 |
Sequence Alignments (This image is cropped. Click for full image.) |
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