| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 92002 |
| Family | PL1 |
| Protein Properties | Length: 321 Molecular Weight: 34859.7 Isoelectric Point: 8.9532 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 56 | 231 | 0 |
| FAKSMIITLTEMLWIRSSTTIDGRGVNITINGRSIVLAGVKNVILHNFQINTVGETDTVHIFAGTSNVWVDHLTSFNAKLGLVSVVQGSTDVTISNCFLT NPNFNMLLGASDADIQDQKMRVTVYRNWFKDSMQRMPHCRWGYCHVINNLYTNWGYYAIGARARAKVKSEANVFIA | |||
| Full Sequence |
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| Protein Sequence Length: 321 Download |
| LPTCVVGFAS GTTGGAQGQS YIVTNADDNA VTPSKGTLRY GVSLGGDDKG GVWITFAKSM 60 IITLTEMLWI RSSTTIDGRG VNITINGRSI VLAGVKNVIL HNFQINTVGE TDTVHIFAGT 120 SNVWVDHLTS FNAKLGLVSV VQGSTDVTIS NCFLTNPNFN MLLGASDADI QDQKMRVTVY 180 RNWFKDSMQR MPHCRWGYCH VINNLYTNWG YYAIGARARA KVKSEANVFI AARRPEVTPW 240 FQGVGADFDL TPVIQSTGDL LLNGSTFHQF LQFGPAIAPQ YRSEAYYPPK RATSTLATLV 300 QNCAGALFGT RVTKCIYVSS * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-31 | 6 | 235 | 255 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-40 | 72 | 229 | 180 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-48 | 70 | 233 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY99626.1 | 0 | 1 | 269 | 113 | 400 | hypothetical protein OsI_21605 [Oryza sativa Indica Group] |
| RefSeq | XP_001753505.1 | 0 | 1 | 315 | 5 | 324 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001761530.1 | 0 | 1 | 315 | 12 | 330 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002453531.1 | 0 | 1 | 293 | 117 | 425 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
| RefSeq | XP_002522747.1 | 0 | 1 | 315 | 68 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 5.99756e-43 | 1 | 267 | 21 | 309 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 5.99756e-43 | 1 | 267 | 21 | 309 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pcl_A | 0.000000000000003 | 67 | 305 | 75 | 351 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.00000000000002 | 67 | 229 | 127 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.00000000000007 | 6 | 231 | 7 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DC950609 | 216 | 104 | 315 | 0 |
| BJ867600 | 214 | 93 | 305 | 0 |
| BJ867266 | 214 | 92 | 304 | 0 |
| JG594056 | 167 | 28 | 194 | 0 |
| HO592271 | 181 | 132 | 308 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Physcomitrella patens | Pp1s9_110V6.1 | ||||
| Picea abies | MA_20455g0010 | ||||
| Selaginella moellendorffii | 115361 | 13606 | 13694 | ||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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