y
Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 920642 |
Family | AA3 |
Protein Properties | Length: 440 Molecular Weight: 48724.3 Isoelectric Point: 8.2026 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 6 | 424 | 0 |
AAYEWVEKKLVFKPLVMGWQSALRDGLLEAGVVPYNGFTFDHIVGTKIGGTIFDPAGHRHSAANLLEYANPDTIVVYLHALVHKILFTTKGRSRPKACGV IYQDANGVFHKVKLAKNAMSEVILCAGAIGSPQLLMLSGVGPKSHLEAHGVDPVIDQPMVGQGMGDNPMNLVLVPSPQLVELSLVEVVGITKFYDFIEGG SGLSLSQNLTRRFLDSNLNILNETLSTQSIVDFFKSLDLPLNMMENAGLIFHKVDGPVSRGYLELRNKNPDENPSVTFNYYQEPEDLERCVKGLNTIIKV IKSKAFLKYKYPNETVRGLLNRTLSLPINLRPKHVSSKSNLTQFCIDTVMTIWHYHGGCQVGRVVDKNYKVLGIDALRVIDGSTFLKSPGTNPQATVMML GRYVGQKILRERAAFREKD |
Full Sequence |
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Protein Sequence Length: 440 Download |
MEEVEAAYEW VEKKLVFKPL VMGWQSALRD GLLEAGVVPY NGFTFDHIVG TKIGGTIFDP 60 AGHRHSAANL LEYANPDTIV VYLHALVHKI LFTTKGRSRP KACGVIYQDA NGVFHKVKLA 120 KNAMSEVILC AGAIGSPQLL MLSGVGPKSH LEAHGVDPVI DQPMVGQGMG DNPMNLVLVP 180 SPQLVELSLV EVVGITKFYD FIEGGSGLSL SQNLTRRFLD SNLNILNETL STQSIVDFFK 240 SLDLPLNMME NAGLIFHKVD GPVSRGYLEL RNKNPDENPS VTFNYYQEPE DLERCVKGLN 300 TIIKVIKSKA FLKYKYPNET VRGLLNRTLS LPINLRPKHV SSKSNLTQFC IDTVMTIWHY 360 HGGCQVGRVV DKNYKVLGID ALRVIDGSTF LKSPGTNPQA TVMMLGRYVG QKILRERAAF 420 REKDYDYLIV SPTKDETSI* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 4.0e-25 | 56 | 171 | 122 | + choline dehydrogenase; Validated | ||
pfam05199 | GMC_oxred_C | 1.0e-26 | 262 | 406 | 150 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
TIGR01810 | betA | 6.0e-28 | 62 | 418 | 384 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 2.0e-34 | 62 | 419 | 379 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 1.0e-171 | 4 | 417 | 427 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAN60330.1 | 0 | 12 | 424 | 56 | 472 | unknown [Arabidopsis thaliana] |
DDBJ | BAB11043.1 | 0 | 2 | 407 | 148 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_001119417.1 | 0 | 2 | 424 | 115 | 550 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_200008.1 | 0 | 2 | 424 | 148 | 583 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | NP_567032.1 | 0 | 2 | 424 | 148 | 574 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 1 | 419 | 131 | 520 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 1 | 419 | 131 | 520 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 1 | 419 | 131 | 520 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 1 | 419 | 131 | 520 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 1 | 419 | 131 | 520 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO796743 | 423 | 4 | 417 | 0 |
FG564536 | 214 | 2 | 214 | 0 |
CX666126 | 295 | 125 | 419 | 0 |
EX035172 | 248 | 177 | 423 | 0 |
HO799688 | 303 | 131 | 427 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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