Basic Information | |
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Species | Arabidopsis lyrata |
Cazyme ID | 920989 |
Family | GT47 |
Protein Properties | Length: 263 Molecular Weight: 30069.6 Isoelectric Point: 10.2061 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 2 | 202 | 1.2e-36 |
SGRDHFLVTGRISRDFRRNSDNKSAWGTNVMLYPESLNLTFLTMERSLTSHNEFILRWQDKIRLTNRTILFSFAGAQRPIRNQNGLVRTQVIKQCKSSSN TCRFLDCDVKANISCDDPISLMKLFESSVFCLQPPGDSLTRRSVFDSILAGCIPVFFNQGSAYKQYRWHIPKNNSEYSVYIPVKELRTGGKNKIEEILRG I |
Full Sequence |
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Protein Sequence Length: 263 Download |
MSGRDHFLVT GRISRDFRRN SDNKSAWGTN VMLYPESLNL TFLTMERSLT SHNEFILRWQ 60 DKIRLTNRTI LFSFAGAQRP IRNQNGLVRT QVIKQCKSSS NTCRFLDCDV KANISCDDPI 120 SLMKLFESSV FCLQPPGDSL TRRSVFDSIL AGCIPVFFNQ GSAYKQYRWH IPKNNSEYSV 180 YIPVKELRTG GKNKIEEILR GIPNERVVGM RENVIRLIPK IVYSKPNRNK PDGEILEDAF 240 DVAVKGVVKG IEGIRRKEFK TE* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd06815 | PLPDE_III_AR_like_1 | 0.005 | 184 | 251 | 71 | + Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes. |
pfam03016 | Exostosin | 1.0e-32 | 1 | 202 | 226 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD15405.1 | 0 | 1 | 262 | 212 | 487 | hypothetical protein [Arabidopsis thaliana] |
RefSeq | NP_180759.2 | 0 | 1 | 262 | 204 | 479 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | NP_193135.2 | 0 | 1 | 255 | 227 | 488 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002300146.1 | 0 | 1 | 256 | 225 | 490 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532518.1 | 0 | 1 | 256 | 234 | 499 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DK556350 | 192 | 56 | 247 | 0 |
DK555691 | 211 | 52 | 247 | 0 |
EY661612 | 260 | 5 | 249 | 0 |
ES802449 | 267 | 3 | 255 | 0 |
FF380105 | 230 | 1 | 214 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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