| Basic Information | |
|---|---|
| Species | Selaginella moellendorffii |
| Cazyme ID | 99190 |
| Family | GH28 |
| Protein Properties | Length: 469 Molecular Weight: 51762 Isoelectric Point: 8.2591 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 79 | 430 | 0 |
| SAAAKSGGAQLNVPAGVWLTAPFNLTSHMTLFLEEDATILATQSEDLWPLMQPLPSYGRGRELPGPRYGSLIHGQHLEDIVITGHNGTIDGNGRKWWEKA KLKQLKHTRGRLIQFMWSRGIEISDVTLRNSPFWTVHPYDCENVTIRGVTIIAPPDAPNTDGIDPDSCRNVLIENCYISVGDDGVAVKSGWDQYGIDYGK PCANITIRNIQVNAPVSAGVSIGSEMSGGITNVTVENVYIWNSKRGVRIKTTPGRGGYVTQVFYRNITMETVRVGIVIKTDYGDHPDEFYDPTALPVVEK IFFDGIYGSEVRIPARIYGSKEVPVRGLEIRDMNVGVTRKKKHVFQCSFLQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 469 Download |
| MIAAVSKRRG FFLLWIAFFL CLFVYQSNYI AQVSGSKRIA RAVPRLRPVV FNLTDFGGIG 60 DGRTINTRAF ERAVAEISSA AAKSGGAQLN VPAGVWLTAP FNLTSHMTLF LEEDATILAT 120 QSEDLWPLMQ PLPSYGRGRE LPGPRYGSLI HGQHLEDIVI TGHNGTIDGN GRKWWEKAKL 180 KQLKHTRGRL IQFMWSRGIE ISDVTLRNSP FWTVHPYDCE NVTIRGVTII APPDAPNTDG 240 IDPDSCRNVL IENCYISVGD DGVAVKSGWD QYGIDYGKPC ANITIRNIQV NAPVSAGVSI 300 GSEMSGGITN VTVENVYIWN SKRGVRIKTT PGRGGYVTQV FYRNITMETV RVGIVIKTDY 360 GDHPDEFYDP TALPVVEKIF FDGIYGSEVR IPARIYGSKE VPVRGLEIRD MNVGVTRKKK 420 HVFQCSFLQG QVFGTIFPKP CEDLGTSSRP GVFREAKMTS ESDGDDDA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-29 | 48 | 439 | 414 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-33 | 51 | 413 | 383 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 7.0e-36 | 10 | 462 | 467 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-41 | 150 | 413 | 274 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-75 | 50 | 364 | 338 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69988.1 | 0 | 6 | 444 | 29 | 484 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277239.1 | 0 | 6 | 467 | 29 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324728.1 | 0 | 11 | 444 | 35 | 470 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 6 | 444 | 30 | 470 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 6 | 444 | 28 | 469 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 44 | 410 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 44 | 410 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 44 | 410 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 44 | 410 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-25 | 86 | 360 | 39 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
