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Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | AC146711_37.1 |
Family | CBM57 |
Protein Properties | Length: 882 Molecular Weight: 99563.2 Isoelectric Point: 6.138 |
Chromosome | Chromosome/Scaffold: 14671144 Start: 130681 End: 137133 |
Description | Di-glucose binding protein with Kinesin motor domain |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 36 | 179 | 9.7e-32 |
MFVNVGGEATNEGADGVKFLSDTFFDGGDVFLTNEAIVEGGDYPSIYQSARVGSFSYRIDNLPPGQYLVDLHFVEIINVNGPKGMRVFNVYIQEEKVLSE LDIYAAVGVNKPLQLIDCRATVKDDGVILIRFESLNGRPVVSGI |
Full Sequence |
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Protein Sequence Length: 882 Download |
MEDANDSLFD SMLVDSSSKL IQNGFARSQS SEECVMFVNV GGEATNEGAD GVKFLSDTFF 60 DGGDVFLTNE AIVEGGDYPS IYQSARVGSF SYRIDNLPPG QYLVDLHFVE IINVNGPKGM 120 RVFNVYIQEE KVLSELDIYA AVGVNKPLQL IDCRATVKDD GVILIRFESL NGRPVVSGIC 180 IRRASKESVP PVPSDFIECN YCAAQIEIPS SQIKVMQTKS TAKYENKIKE LTMQCELKAK 240 ECYEAWTSLT EMSREVEKVQ MELDQVTFKS FTTELTAEKQ AENLRSISNR YELDKKKWAE 300 AIISLQEKVQ KHIKSIDTKF VLQLMKSEQS RLSFEAHECV DSIPELNKMV YAVQELVKQC 360 EDLKVKYYEE MTQRKKLFNE VQEAKGNIRV FCRCRPLNKV EMSSGCTTVV DFDAAKDGCL 420 GILATGSSKK LFRFDRVYTP KDDQVDVFAD ASSMVISVLD GYNVCIFAYG QTGTGKTFTM 480 EGTEQNRGVN YRTLEHLFRV SKERSETFSY DISVSVLEVY NEQIRDLLAT GPASKRLEIK 540 QNYEGHHHVP GVVEAKVDNI SDVWTVLQAG SNARAVGSNN VNEHSSRSHC MLCIMVKTKN 600 LMNGECTKSK LWLVDLSGSE RLAKTDVQGE RLKEAQNINR SLSALGDVIS ALAAKSSHIP 660 YRNSKLTHLL QDSLGGDSKT LMFVQISPSD QDVGETLSSL NFATRVRGVE LDPVKKQIDT 720 GELQKTKAML DKARSECRCK EESLRKLEES LQNIESKAKG KDNIHKNLQE KIKELEGQIK 780 LKTSMQNQSE KQVSQLCERL KGKEETCCTL QHKVKELERK IKEQLQTETA NFQQKVWDLE 840 KKLKDQLQGS ESESSFLKDK IKELERKLKE QEQNSESLLK QQ 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd01369 | KISc_KHC_KIF5 | 4.0e-100 | 387 | 705 | 324 | + Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. | ||
cd00106 | KISc | 2.0e-119 | 387 | 707 | 329 | + Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. | ||
smart00129 | KISc | 4.0e-133 | 387 | 715 | 337 | + Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. | ||
pfam00225 | Kinesin | 5.0e-138 | 393 | 709 | 326 | + Kinesin motor domain. | ||
cd01366 | KISc_C_terminal | 0 | 385 | 712 | 330 | + Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. |
Gene Ontology | |
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GO Term | Description |
GO:0003777 | microtubule motor activity |
GO:0005524 | ATP binding |
GO:0007018 | microtubule-based movement |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63715.1 | 0 | 1 | 869 | 43 | 884 | hypothetical protein [Vitis vinifera] |
EMBL | CBI40845.1 | 0 | 52 | 845 | 1 | 785 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266404.1 | 0 | 1 | 811 | 43 | 847 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002527363.1 | 0 | 1 | 798 | 1 | 787 | ATP binding protein, putative [Ricinus communis] |
RefSeq | XP_002532381.1 | 0 | 6 | 828 | 48 | 857 | ATP binding protein, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2h58_A | 0 | 384 | 711 | 2 | 330 | A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp |
PDB | 3h4s_A | 0 | 374 | 762 | 1 | 382 | A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator |
PDB | 3cob_C | 0 | 382 | 730 | 1 | 347 | A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator |
PDB | 3cob_A | 0 | 382 | 730 | 1 | 347 | A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator |
PDB | 3cnz_B | 0 | 382 | 730 | 1 | 347 | A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL921658 | 258 | 477 | 734 | 0 |
EL442930 | 266 | 473 | 736 | 0 |
EH194227 | 309 | 520 | 828 | 0 |
DV990845 | 302 | 441 | 738 | 0 |
ES865056 | 287 | 454 | 736 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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