| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | AC194852.3_FGT007 |
| Family | PL1 |
| Protein Properties | Length: 450 Molecular Weight: 50334 Isoelectric Point: 9.1725 |
| Chromosome | Chromosome/Scaffold: 6 Start: 103636711 End: 103638258 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 175 | 302 | 1.2e-31 |
| ITFAKTMIITLKEELIIRGDKTIDGRGAQVRIANGAQLTVQFVNNVIIHNIHINDIVSSNKNGGYVRDSADHFGWRIVSDGDGVTVFGSTNVWLDHLSLS NCQDGLIDVIAKSTGVTISNCHLTNHND | |||
| Full Sequence |
|---|
| Protein Sequence Length: 450 Download |
| MEEGFRWSTP CSLVLYSVFL LLSATASEAN IGDFDDYWQQ RKLMADAAAE ATYKHDPLEL 60 RTLKTMMYRR TRARSRTSIE KEDTSTRREM MEQKKSKLSG PCTATNPIDR CWRCRQDWAT 120 DRKRLARCAK GFGRNTTGGL AGKFYVVTDG TDDDVVNPRP GTLRWGVIQI EPLWITFAKT 180 MIITLKEELI IRGDKTIDGR GAQVRIANGA QLTVQFVNNV IIHNIHINDI VSSNKNGGYV 240 RDSADHFGWR IVSDGDGVTV FGSTNVWLDH LSLSNCQDGL IDVIAKSTGV TISNCHLTNH 300 NDRHALQLQR QAPRGPGHAG PRAEDAEVPL GLLPRGQQRV NDYTHWLMYA IGGSKAPTII 360 SQGNRYIAPP NFAAKQVTKQ HDAPESEWKN WAWHSENDLF MEGAYFTVTA GQINRQLNKK 420 DLIKPKPGSY VTRLTRYAGS LACRPGEPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 0.0004 | 256 | 301 | 55 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam04431 | Pec_lyase_N | 4.0e-6 | 30 | 90 | 61 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| pfam00544 | Pec_lyase_C | 6.0e-31 | 186 | 366 | 219 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-34 | 181 | 370 | 211 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF87417.1 | 0 | 5 | 449 | 7 | 444 | unknown [Zea mays] |
| RefSeq | NP_001057945.1 | 0 | 27 | 449 | 31 | 448 | Os06g0583900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150723.1 | 0 | 1 | 449 | 1 | 451 | pectate lyase [Zea mays] |
| RefSeq | XP_002437204.1 | 0 | 2 | 449 | 3 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
| RefSeq | XP_002453531.1 | 0 | 5 | 449 | 8 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 106 | 439 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 106 | 439 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000005 | 175 | 301 | 50 | 162 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.001 | 186 | 301 | 73 | 196 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
