Basic Information | |
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Species | Zea mays |
Cazyme ID | AC210013.4_FGT017 |
Family | GH28 |
Protein Properties | Length: 488 Molecular Weight: 51322.9 Isoelectric Point: 7.1352 |
Chromosome | Chromosome/Scaffold: 5 Start: 3425273 End: 3427433 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 117 | 464 | 0 |
EAACFSPRPAVLLVPGGKRYLLKLVALSGPCKSSVTVTVEGTLVASRDRSDWIGGGGGTDRRRHWIVFRQVDGLTVGGGGAVDGSGETWWKHSCKINKDL PCEEAPTALSFHYCTSLRVHDLKIVDSQQIHVSIEDCTGVQLTGLSITAPGTSPNTDGIHITRSRDVQVTNCKIKTGDDCLSIEAGTHDLHVSQIVCGPG HGISIGSLGDDNSRAEVSGITIDTVQLYGTTNGARIKTYQGGSGYARDITFQNMAMHGVENPIVIDQDYCDKRQATSPPCEAQGSSSSSAVEVSDVAFRN IRGTTVSKDAIKLSCSWNVPCHGITLQNISLEMLGGKGTAESTCRNAR |
Full Sequence |
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Protein Sequence Length: 488 Download |
MHSSLLLLLA MPTTMVVAAA AARTDKPRLM WLPPLVVALL LLSGALLEAA AAAAGTSTTS 60 ADDAASSTSS LAAERAATGR RSRLLVASQS TFFSLDSYGA RGDGRHDDTQ ALARAWEAAC 120 FSPRPAVLLV PGGKRYLLKL VALSGPCKSS VTVTVEGTLV ASRDRSDWIG GGGGTDRRRH 180 WIVFRQVDGL TVGGGGAVDG SGETWWKHSC KINKDLPCEE APTALSFHYC TSLRVHDLKI 240 VDSQQIHVSI EDCTGVQLTG LSITAPGTSP NTDGIHITRS RDVQVTNCKI KTGDDCLSIE 300 AGTHDLHVSQ IVCGPGHGIS IGSLGDDNSR AEVSGITIDT VQLYGTTNGA RIKTYQGGSG 360 YARDITFQNM AMHGVENPIV IDQDYCDKRQ ATSPPCEAQG SSSSSAVEVS DVAFRNIRGT 420 TVSKDAIKLS CSWNVPCHGI TLQNISLEML GGKGTAESTC RNARWRTSGT VLPQPCTSFI 480 DLGHGSN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-81 | 84 | 464 | 384 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-94 | 88 | 477 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-101 | 120 | 463 | 344 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-125 | 80 | 480 | 405 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-130 | 91 | 474 | 386 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001140231.1 | 0 | 47 | 478 | 27 | 440 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | NP_001142092.1 | 0 | 1 | 487 | 1 | 487 | hypothetical protein LOC100274254 [Zea mays] |
RefSeq | XP_002463688.1 | 0 | 89 | 476 | 58 | 432 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 47 | 480 | 18 | 435 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 19 | 478 | 2 | 450 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-23 | 192 | 447 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-16 | 190 | 429 | 72 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-16 | 190 | 429 | 72 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-16 | 190 | 429 | 72 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-16 | 190 | 429 | 72 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |