Basic Information | |
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Species | Zea mays |
Cazyme ID | AC231180.2_FGT006 |
Family | GH28 |
Protein Properties | Length: 459 Molecular Weight: 48288.9 Isoelectric Point: 7.4752 |
Chromosome | Chromosome/Scaffold: 8 Start: 76128223 End: 76129850 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 434 | 0 |
WLTGPFNLTSHMTLFLARGAIVRATQPCLATIELISEQDTSSWPLIDPLPSYGRGRELPGGRYMSLIHGHGLQDVFITGENGTIDGQGGVWWDMWKKRTL PFTRPHLLELMYSTDVVVSNLVFQDSPFWNIHPVYCSNVVIANLTVLAPHDSPNTDGIDLDSSSNVCVEDCYISAGDDLISIKSGWDEYGVAFGRPSSGI TVRRITGSGPFAGFAVGSETSGGVEDVVAEHLSFSGVGVGVHVKTNSGRGGFIRNVTVSQVTLDGARYGLRIAGDVGGHPGASYNASLLPVIDGVAVRNV WGRNVRQAGLIRGIRDSVFSNICLSNVKLYGIGSDSIGPWRCRAVS |
Full Sequence |
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Protein Sequence Length: 459 Download |
MPPTLGLLLA AAAAVLLLLL PPPPSAGAQE TCWSGPAPRR GAWMSVASFG ARGDGQTLNT 60 GAFARAVARI ARRRGARGGT LLYVPPGVWL TGPFNLTSHM TLFLARGAIV RATQPCLATI 120 ELISEQDTSS WPLIDPLPSY GRGRELPGGR YMSLIHGHGL QDVFITGENG TIDGQGGVWW 180 DMWKKRTLPF TRPHLLELMY STDVVVSNLV FQDSPFWNIH PVYCSNVVIA NLTVLAPHDS 240 PNTDGIDLDS SSNVCVEDCY ISAGDDLISI KSGWDEYGVA FGRPSSGITV RRITGSGPFA 300 GFAVGSETSG GVEDVVAEHL SFSGVGVGVH VKTNSGRGGF IRNVTVSQVT LDGARYGLRI 360 AGDVGGHPGA SYNASLLPVI DGVAVRNVWG RNVRQAGLIR GIRDSVFSNI CLSNVKLYGI 420 GSDSIGPWRC RAVSGSALDV QPSPCAELAS TSGTGFCT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 9.0e-22 | 169 | 351 | 187 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-22 | 44 | 393 | 364 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-26 | 169 | 352 | 188 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-29 | 162 | 363 | 216 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-50 | 44 | 384 | 360 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT44156.1 | 0 | 30 | 458 | 34 | 473 | putative polygalacturonase [Oryza sativa Japonica Group] |
GenBank | EAY99223.1 | 0 | 30 | 458 | 34 | 447 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
RefSeq | NP_001056466.1 | 0 | 30 | 458 | 34 | 447 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001149385.1 | 0 | 27 | 458 | 27 | 446 | LOC100283011 [Zea mays] |
RefSeq | XP_002441600.1 | 0 | 25 | 458 | 19 | 438 | hypothetical protein SORBIDRAFT_09g030140 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4e-39 | 44 | 419 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4e-39 | 44 | 419 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4e-39 | 44 | 419 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4e-39 | 44 | 419 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000003 | 88 | 351 | 51 | 301 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |