| Basic Information | |
|---|---|
| Species | Zea mays |
| Cazyme ID | AC233851.1_FGT011 |
| Family | PL1 |
| Protein Properties | Length: 427 Molecular Weight: 45482.5 Isoelectric Point: 10.846 |
| Chromosome | Chromosome/Scaffold: 3 Start: 189464384 End: 189466218 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 114 | 319 | 0 |
| ITFERGMHIRLAQPLFVRSFTAIDGRGADVHIAGGAGIVLHEVSGVIIHGLHIHDIRSQPEGPAVRPGGAVRPAGGGGGSGSGTDGDAIRVVASSKVWID HNSLSRCEDGLVDVTVGSNDVTVSNNWFFNHDKVMLLGHDDGHAADSRMRVTVAFNRFGPNVNQRMPRIRHGYAHVVNNVYLGWRDYAIGGSMGPSVKSE GNLFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 427 Download |
| MARSRRLGDL GQVPSMASKE FLLAFLVIIL HGAAATTTVH AANIIDRCWR RQPNWAANRQ 60 RLAACSVGFA GKMRQNRGPG VTAYTVTDPG DDPVRPRPGT LRYGATVLGG KVWITFERGM 120 HIRLAQPLFV RSFTAIDGRG ADVHIAGGAG IVLHEVSGVI IHGLHIHDIR SQPEGPAVRP 180 GGAVRPAGGG GGSGSGTDGD AIRVVASSKV WIDHNSLSRC EDGLVDVTVG SNDVTVSNNW 240 FFNHDKVMLL GHDDGHAADS RMRVTVAFNR FGPNVNQRMP RIRHGYAHVV NNVYLGWRDY 300 AIGGSMGPSV KSEGNLFVAS GTAENRKVTR RMPFAGRDWD WASVGDSFEN GAFFKQTGSR 360 VQPNYNKHQA FAAASSNQVR SLTKDAGALS CSVGVRGARW LWRSAVYFGL VGALAGGAAA 420 AIAGTL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 7.0e-25 | 132 | 388 | 280 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-56 | 132 | 317 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-65 | 125 | 321 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR37663.1 | 0 | 73 | 334 | 1 | 262 | unknown [Zea mays] |
| DDBJ | BAD01325.1 | 0 | 41 | 392 | 26 | 379 | putative Cup s 1 pollen allergen [Oryza sativa Japonica Group] |
| GenBank | EAZ06386.1 | 0 | 41 | 392 | 26 | 379 | hypothetical protein OsI_28615 [Oryza sativa Indica Group] |
| RefSeq | XP_002299118.1 | 0 | 43 | 392 | 2 | 349 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002458626.1 | 0 | 16 | 394 | 1 | 370 | hypothetical protein SORBIDRAFT_03g036930 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 43 | 390 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 43 | 390 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-20 | 142 | 321 | 77 | 250 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 2e-18 | 128 | 294 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.000000000000002 | 148 | 395 | 94 | 322 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
