| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | AC235749_18.1 |
| Family | PL1 |
| Protein Properties | Length: 219 Molecular Weight: 23900.5 Isoelectric Point: 7.7054 |
| Chromosome | Chromosome/Scaffold: 2357494 Start: 55886 End: 57691 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 8 | 137 | 0 |
| HFGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHV VNNDYTHWEMYAIGGSADPTINSQGNRYNA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 219 Download |
| MVRSSETHFG WRTMADGDAV SIFGSSHIWV DHNSLSHCAD GLVDAVMGST AITISNNHFT 60 HHNEVILLGH SDSYTRDKQM QVTIAYNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI 120 GGSADPTINS QGNRYNAPVN PFAKEVTKRV ETAETQWKGW NWRSEGDLYL NGAYFTASGA 180 GASASYARAS SLGAKSSAMV GTMTSNAGAL GCKRGRQC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-23 | 18 | 133 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-56 | 1 | 135 | 143 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-58 | 15 | 138 | 133 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK66161.1 | 0 | 1 | 218 | 151 | 368 | pectate lyase [Fragaria x ananassa] |
| EMBL | CAB36835.1 | 0 | 1 | 218 | 157 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
| EMBL | CAN78491.1 | 0 | 1 | 218 | 201 | 418 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_567409.1 | 0 | 1 | 218 | 253 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002297822.1 | 0 | 1 | 218 | 233 | 450 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 16 | 210 | 149 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 16 | 210 | 149 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.000000000000008 | 18 | 112 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.00000000000001 | 16 | 126 | 115 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.000000000001 | 6 | 209 | 130 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| FD782720 | 219 | 1 | 219 | 0 |
| CV529671 | 219 | 1 | 219 | 0 |
| HO778688 | 219 | 1 | 219 | 0 |
| HO795019 | 219 | 1 | 219 | 0 |
| HO795019 | 102 | 64 | 165 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |