| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G02460.1 |
| Family | GH28 |
| Protein Properties | Length: 492 Molecular Weight: 53462.9 Isoelectric Point: 6.4501 |
| Chromosome | Chromosome/Scaffold: 1 Start: 504673 End: 507204 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 116 | 445 | 0 |
| CNNENNTDSVLLVPYGYTFMIQSTIFTGPCRSYQFFQVDGTIVTPDGPESWPSNISKRQWLVFYRVNGMALKGEGVIDGRGQKWWDLPCKPHRSVNKSAI VTGPCDSPIALRFFMSSNLRVEGLQIKNSPQFHFRFDGCQGVHVESLHITAPPLSPNTDGIHIENSNSVTIYNSIISNGDDCVSIGSGSYDVDIRNLTCG PGGHGISIGSLGNHNSRACVSNITVRDSVIKYSDNGVRIKTWQGGSGSVSGVTFNNIHVDSVRNPIIIDQYYCMTKDCANKTSAVFVSDIAYQGIKGTYD IRSPPMHFGCSDAVPCTNLTLSDIELLPAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 492 Download |
| MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT 60 PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG ETDDTEAFKT AWDSSCNNEN 120 NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR 180 VNGMALKGEG VIDGRGQKWW DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ 240 IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI 300 GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG 360 SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV FVSDIAYQGI KGTYDIRSPP 420 MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL 480 QGSLVDKCGS S* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-79 | 90 | 476 | 395 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 2.0e-80 | 88 | 447 | 362 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-88 | 124 | 441 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-95 | 90 | 441 | 355 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-118 | 88 | 475 | 390 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD22651.1 | 0 | 76 | 490 | 52 | 451 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
| EMBL | CBI37004.1 | 0 | 88 | 488 | 88 | 484 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_192098.2 | 0 | 76 | 490 | 52 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_563654.1 | 0 | 1 | 491 | 1 | 491 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002320271.1 | 0 | 84 | 488 | 38 | 438 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 1e-24 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-24 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-24 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-24 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 1e-24 | 153 | 445 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
