| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G02790.1 |
| Family | GH28 |
| Protein Properties | Length: 423 Molecular Weight: 44429.8 Isoelectric Point: 8.2892 |
| Chromosome | Chromosome/Scaffold: 1 Start: 610391 End: 612324 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 395 | 0 |
| QVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVTVNVIGTIIATTSGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRN MKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLSVGSLGKYKN EEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGSRGGDSQVAISDILFKNIRGTTITKDVVQIMCSKSVPCQGVN VVDVNLDYVGKTGGEKKSS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 423 Download |
| MANARSLVAK ANNINVGSLI LMALVFGSCV ANGEYLGGRR GLAANSGNPT VYDITKFGAV 60 GDGSTNTFKA FLNTWIQVCD SPVPATLLVP KGTFLAGPVI FAGPCKSKVT VNVIGTIIAT 120 TSGYATPEWF LFERVDNLVL TGTGTFHGKG EAVWKADGCG KKVQCNLPPT SLKFRNMKNV 180 EINGISSVNA KAFHMFLVKT ENVNIQNIKL TAPAESPNTD GIHLSNADNV SILDSTIATG 240 DDCVSVGRGS NNVTVERVIC GPGHGLSVGS LGKYKNEEDV SGIHVNNCTM IETDNGLRIK 300 TWGGSDPSKA VDIKFENIIM QSVKNPIIID QNYGSRGGDS QVAISDILFK NIRGTTITKD 360 VVQIMCSKSV PCQGVNVVDV NLDYVGKTGG EKKSSSGGLV GALCDNANVI FGGKLSFPMC 420 PK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-82 | 51 | 384 | 345 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-84 | 32 | 420 | 401 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-87 | 51 | 382 | 346 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-93 | 79 | 384 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-117 | 21 | 421 | 410 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABW24665.1 | 0 | 1 | 422 | 1 | 421 | pollen-specific polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CBI36886.1 | 0 | 1 | 420 | 1 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_171778.1 | 0 | 1 | 422 | 1 | 422 | PGA4 (POLYGALACTURONASE 4); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002301488.1 | 0 | 68 | 420 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301489.1 | 0 | 17 | 420 | 5 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 5e-20 | 140 | 362 | 113 | 341 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000000000000002 | 83 | 382 | 26 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000000000000002 | 83 | 382 | 26 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000000000000002 | 83 | 382 | 26 | 321 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1rmg_A | 0.000000000000004 | 43 | 382 | 12 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
