| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G05650.1 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 41571.4 Isoelectric Point: 9.5823 |
| Chromosome | Chromosome/Scaffold: 1 Start: 1690264 End: 1692126 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 379 | 0 |
| QGACGSAASATVVVPTGTFLLKVITFGGPCKSKITFQVTGTVVAPEDYRTFGNSGSWILFNKVNRFSLVGGTFDARGSGFWSCRKSGQNCPPGVRSISFN SAKDVIISGVKSMNSQVSHMTLNGCTNVAVRNIRLVAPGDSPNTDGFTVQFSTGVTLTGSTVQTGDDCVAIGQGTRNFLISKLACGPGHGVSIGSLAKQL NEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQNLIMRNVQNPIIIDQNYCPSNQGCPTEHSGVKITQVTYKNIQGTSATQEAMKLVCSKSN PCTGITLQDIKLTYNKGTPATSLCFNAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MTKSAITFPL IFTLLTFIDV SSSASIVFNV VSFGAKPDGV TDSTAAFLKA WQGACGSAAS 60 ATVVVPTGTF LLKVITFGGP CKSKITFQVT GTVVAPEDYR TFGNSGSWIL FNKVNRFSLV 120 GGTFDARGSG FWSCRKSGQN CPPGVRSISF NSAKDVIISG VKSMNSQVSH MTLNGCTNVA 180 VRNIRLVAPG DSPNTDGFTV QFSTGVTLTG STVQTGDDCV AIGQGTRNFL ISKLACGPGH 240 GVSIGSLAKQ LNEDGVENVT VSSSVFTGSQ NGVRIKSWAR PSTGFVRNVF FQNLIMRNVQ 300 NPIIIDQNYC PSNQGCPTEH SGVKITQVTY KNIQGTSATQ EAMKLVCSKS NPCTGITLQD 360 IKLTYNKGTP ATSLCFNAVG KNLGVIQPTS CLNR* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-88 | 55 | 378 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-89 | 11 | 388 | 385 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-101 | 27 | 393 | 374 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-102 | 20 | 391 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 0 | 1 | 394 | 394 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172056.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_172057.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181917.1 | 0 | 10 | 392 | 6 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002309713.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 3e-24 | 41 | 367 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 3e-24 | 41 | 367 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 3e-24 | 41 | 367 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 3e-24 | 41 | 367 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 3e-24 | 41 | 367 | 6 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
