| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G05660.1 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 41853.9 Isoelectric Point: 9.5192 |
| Chromosome | Chromosome/Scaffold: 1 Start: 1694286 End: 1696058 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 379 | 0 |
| QGACVSASSATVVVPKGTFLLKVITFGGPCKSKITFQVAGTVIAPEDYRTFGNSGFWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFN SAKDVIISGVKSMNSQVTHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQHSTGVTFTGSTVQTGDDCVAIGPGTRNLLITKLACGPGHGVSIGSLAKEL KEDGVENVTVSSSVFTGSQNGVRIKSWARPSNGFVRTVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSS PCTGITLQDIKLTYNKGTPATSFCFNAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MTKSVIRFSL LFTLLTFIDV SISASNVFNV VSFGAKPDGV TDSTGAFLKA WQGACVSASS 60 ATVVVPKGTF LLKVITFGGP CKSKITFQVA GTVIAPEDYR TFGNSGFWIL FNKVNRFSLV 120 GGTFDARANG FWSCRKSGQN CPPGVRSISF NSAKDVIISG VKSMNSQVTH MTLNGCTNVV 180 VRNVKLVAPG NSPNTDGFHV QHSTGVTFTG STVQTGDDCV AIGPGTRNLL ITKLACGPGH 240 GVSIGSLAKE LKEDGVENVT VSSSVFTGSQ NGVRIKSWAR PSNGFVRTVF FQDLVMKNVE 300 NPIIIDQNYC PTHEGCPNEY SGVKISQVTY KNIQGTSATQ EAMKLVCSKS SPCTGITLQD 360 IKLTYNKGTP ATSFCFNAVG KSLGVIQPTS CLNR* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-84 | 14 | 388 | 382 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-86 | 66 | 378 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-94 | 20 | 391 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 6.0e-100 | 23 | 393 | 378 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 0 | 1 | 394 | 394 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172056.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_172057.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181917.1 | 0 | 3 | 392 | 5 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002309713.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 1 | 392 | 1 | 390 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 4e-20 | 52 | 367 | 15 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-20 | 52 | 367 | 15 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-20 | 52 | 367 | 15 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-20 | 52 | 367 | 15 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 4e-20 | 52 | 367 | 15 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
