| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G09880.1 |
| Family | PL4 |
| Protein Properties | Length: 632 Molecular Weight: 72389.2 Isoelectric Point: 5.86 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3208828 End: 3211653 |
| Description | rhamnogalacturonate lyase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 2 | 606 | 0 |
| ENRFLQLTLSNPEGFVTGIQYNGIDNVLAYYTNKEYDRGYWDVVWNFPGKKAKKTKGTLDRIEATKMEVITQNDEKIELSFTRTWNTSSTTAVPVNIDKR FVMLQNSSGFYSYAIFERLQGWPAVELDNMRLVFKLNKKKFHYMAISDDRQRYMPVPDDRVPPRGQPLAYPEAVQLLDPIEPEFKGEVDDKYEYSMESKD IKVHGWISTNDSVGFWQITPSNEFRSAGPLKQFLGSHVGPTNLAVFHSTHYVGADLIMSFKNGEAWKKVFGPVFIYLNSFPKGVDPLLLWHEAKNQTKIE EEKWPYNFTASDDFPASDQRGSVSGRLLVRDRFISSEDIPANGSYVGLAAPGDVGSWQRECKGYQFWSKADENGSFSINNVRSGRYNLYAFAPGFIGDYH NDTVFDISPGSKISLGDLVYEPPRDGSTLWEIGVPDRSAAEFYIPDPNPSFVNKLYLNHSDKYRQYGLWERYSELYPDEDMVYNVDIDDYSKNWFFMQVT RKQANGGYKGTTWQIRFQFDDKMKNVTGNFKLRIALATSNVAELQVRVNDLSADPPLFRTEQIGRDNTIARHGIHGLYWLYSVNVPAASLHVGNNTIYLT QALAT | |||
| Full Sequence |
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| Protein Sequence Length: 632 Download |
| MENRFLQLTL SNPEGFVTGI QYNGIDNVLA YYTNKEYDRG YWDVVWNFPG KKAKKTKGTL 60 DRIEATKMEV ITQNDEKIEL SFTRTWNTSS TTAVPVNIDK RFVMLQNSSG FYSYAIFERL 120 QGWPAVELDN MRLVFKLNKK KFHYMAISDD RQRYMPVPDD RVPPRGQPLA YPEAVQLLDP 180 IEPEFKGEVD DKYEYSMESK DIKVHGWIST NDSVGFWQIT PSNEFRSAGP LKQFLGSHVG 240 PTNLAVFHST HYVGADLIMS FKNGEAWKKV FGPVFIYLNS FPKGVDPLLL WHEAKNQTKI 300 EEEKWPYNFT ASDDFPASDQ RGSVSGRLLV RDRFISSEDI PANGSYVGLA APGDVGSWQR 360 ECKGYQFWSK ADENGSFSIN NVRSGRYNLY AFAPGFIGDY HNDTVFDISP GSKISLGDLV 420 YEPPRDGSTL WEIGVPDRSA AEFYIPDPNP SFVNKLYLNH SDKYRQYGLW ERYSELYPDE 480 DMVYNVDIDD YSKNWFFMQV TRKQANGGYK GTTWQIRFQF DDKMKNVTGN FKLRIALATS 540 NVAELQVRVN DLSADPPLFR TEQIGRDNTI ARHGIHGLYW LYSVNVPAAS LHVGNNTIYL 600 TQALATSPFQ GLMYDYIRLE YPDSINYITR S* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 5.0e-33 | 320 | 419 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 7.0e-50 | 431 | 620 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 8.0e-65 | 1 | 280 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 5.0e-98 | 1 | 189 | 189 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005575 | cellular_component |
| GO:0008150 | biological_process |
| GO:0016829 | lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172459.1 | 0 | 1 | 631 | 1 | 631 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002527353.1 | 0 | 1 | 622 | 17 | 633 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527356.1 | 0 | 1 | 630 | 130 | 754 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527356.1 | 1.99993e-41 | 63 | 189 | 1 | 128 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 1 | 622 | 17 | 634 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY443137 | 262 | 369 | 629 | 0 |
| GW864372 | 311 | 133 | 443 | 0 |
| DT552229 | 296 | 1 | 294 | 0 |
| DW479600 | 281 | 2 | 281 | 0 |
| DK542563 | 214 | 416 | 629 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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