| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G10640.1 |
| Family | GH28 |
| Protein Properties | Length: 533 Molecular Weight: 58347.8 Isoelectric Point: 8.691 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3515365 End: 3517888 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 144 | 495 | 0 |
| AACKIEASVMLVPPEYTYLVGPISFSGPYCQANIVFQLDGTIIAPTDSKTWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDSPFIDSDTKLIVPL NNSANQNPPMPIRSELDERMPSIKPTALRFSGSFGVEVTGITIQNSPQCHLKFDDCVGVVVHDIAVSSPGDSPNTDGIHLQNTKDVLIHSTTLACGDDCI SIQTGCSNVFVHNVNCGPGHGISIGSLGKEGTKACVSNITVRDVAMHNTMTGVRIKTWQGGVGSVKGIIFSNIQLNQVQIPITINQFYCDHSKCKNQTSA VAVEGVTYERIKGTYTVKPVHFACSDNFPCVDVQLSSIELKPVQEKYRMYDA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 533 Download |
| MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH 60 GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS GPPKVQPPPL PPQKGSQVFN 120 VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ 180 LDGTIIAPTD SKTWGKGLMW WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI 240 VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV 300 GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG 360 PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT WQGGVGSVKG IIFSNIQLNQ 420 VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS 480 IELKPVQEKY RMYDAYCWQT FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-76 | 119 | 483 | 371 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-78 | 146 | 483 | 339 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-79 | 119 | 484 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 5.0e-88 | 120 | 484 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-100 | 119 | 511 | 398 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005575 | cellular_component |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF17670.1 | 0 | 1 | 532 | 1 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
| GenBank | AAK63956.1 | 0 | 153 | 532 | 1 | 380 | At1g10640/F20B24_8 [Arabidopsis thaliana] |
| GenBank | ABK95830.1 | 0 | 1 | 532 | 1 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_563875.6 | 0 | 1 | 532 | 1 | 532 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_564758.2 | 0 | 1 | 532 | 1 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-19 | 195 | 431 | 96 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 4e-17 | 105 | 431 | 18 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-17 | 105 | 431 | 18 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-17 | 105 | 431 | 18 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-17 | 105 | 431 | 18 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
