| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G11720.1 |
| Family | CBM53 |
| Protein Properties | Length: 1043 Molecular Weight: 118512 Isoelectric Point: 6.4934 |
| Chromosome | Chromosome/Scaffold: 1 Start: 3951553 End: 3957044 |
| Description | soluble starch synthase 3, chloroplast precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 154 | 237 | 1e-29 |
| EDIEVFLNRNLSTLNNEPDVLIMGAFNEWRWKSFTRRLEKTWIHEDWLSCLLHIPKEAYKMDFVFFNGQSVYDNNDSKDFCVEI | |||
| CBM53 | 329 | 423 | 1.1e-30 |
| DTVKLYYNKRSGPLTNSKELWLHGGFNNWVDGLSIVVKLVNAELKDVDPKSGNWWFAEVVVPGGALVIDWVFADGPPKGAFLYDNNGYQDFHALV | |||
| CBM53 | 496 | 584 | 1.6e-32 |
| NPVTVLYNPANTVLNGKPEVWFRGSFNRWTHRLGPLPPQKMEATDDESSHVKTTAKVPLDAYMMDFVFSEKEDGGIFDNKNGLDYHLPV | |||
| GT5 | 595 | 1038 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIVFPKYDCIKHNFVKDLQFNRSYHWGGTEIKVWHGKVEGLSVYFLDPQNGLFQRGCVYGCADD AGRFGFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDHYTQYGLIKTRIVFTIHNLEFGANAIGKAMTFADKATTVSPTYAKEVAGNSVISAHLYK FHGIINGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEELQNRLGLKSADFPVVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFV NLANQLHSSHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGAVPVVRKTGGLFDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGV DYALNRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYLELYH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1043 Download |
| MISYFLNQDF SRKKQGRMAA SGPKSSGPRG FGRRTTVGSA QKRTQKKNGE KDSNATSTAT 60 NEVSGISKLP AAKVDVQKQS SVVLNERNVL DRSDIEDGSD RLDKKTTDDD DLLEQKLKLE 120 RENLRRKEIE TLAAENLARG DRMFVYPVIV KPDEDIEVFL NRNLSTLNNE PDVLIMGAFN 180 EWRWKSFTRR LEKTWIHEDW LSCLLHIPKE AYKMDFVFFN GQSVYDNNDS KDFCVEIKGG 240 MDKVDFENFL LEEKLREQEK LAKEEAERER QKEEKRRIEA QKAAIEADRA QAKAETQKRR 300 ELLQPAIKKA VVSAENVWYI EPSDFKAEDT VKLYYNKRSG PLTNSKELWL HGGFNNWVDG 360 LSIVVKLVNA ELKDVDPKSG NWWFAEVVVP GGALVIDWVF ADGPPKGAFL YDNNGYQDFH 420 ALVPQKLPEE LYWLEEENMI FRKLQEDRRL KEEVMRAKME KTARLKAETK ERTLKKFLLS 480 QKDVVYTEPL EIQAGNPVTV LYNPANTVLN GKPEVWFRGS FNRWTHRLGP LPPQKMEATD 540 DESSHVKTTA KVPLDAYMMD FVFSEKEDGG IFDNKNGLDY HLPVVGGISK EPPLHIVHIA 600 VEMAPIAKVG GLGDVVTSLS RAVQELNHNV DIVFPKYDCI KHNFVKDLQF NRSYHWGGTE 660 IKVWHGKVEG LSVYFLDPQN GLFQRGCVYG CADDAGRFGF FCHAALEFLL QGGFHPDILH 720 CHDWSSAPVS WLFKDHYTQY GLIKTRIVFT IHNLEFGANA IGKAMTFADK ATTVSPTYAK 780 EVAGNSVISA HLYKFHGIIN GIDPDIWDPY NDNFIPVPYT SENVVEGKRA AKEELQNRLG 840 LKSADFPVVG IITRLTHQKG IHLIKHAIWR TLERNGQVVL LGSAPDPRIQ NDFVNLANQL 900 HSSHGDRARL VLTYDEPLSH LIYAGADFIL VPSIFEPCGL TQLIAMRYGA VPVVRKTGGL 960 FDTVFDVDHD KERAQAQVLE PNGFSFDGAD APGVDYALNR AISAWYDGRE WFNSLCKTVM 1020 EQDWSWNRPA LEYLELYHSA RK* 1080 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 8.0e-148 | 594 | 1040 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 1.0e-160 | 594 | 1040 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 2.0e-174 | 594 | 1042 | 488 | + glycogen synthase; Provisional | ||
| PLN02316 | PLN02316 | 0 | 18 | 1042 | 1042 | + synthase/transferase | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 595 | 1039 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009011 | starch synthase activity |
| GO:0009058 | biosynthetic process |
| GO:0009507 | chloroplast |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| GO:0019252 | starch biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABB46391.1 | 0 | 18 | 1042 | 1 | 1025 | soluble starch synthase III [Arabidopsis thaliana] |
| EMBL | CAA64173.1 | 0 | 74 | 1042 | 258 | 1228 | soluble-starch-synthase [Solanum tuberosum] |
| RefSeq | NP_172637.1 | 0 | 18 | 1042 | 1 | 1025 | ATSS3 (starch synthase 3); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002305571.1 | 0 | 18 | 1042 | 1 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 18 | 1042 | 1 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 594 | 1038 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 594 | 1038 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 594 | 1038 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 594 | 1038 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 594 | 1038 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778003 | 701 | 129 | 829 | 0 |
| HO794758 | 572 | 472 | 1042 | 0 |
| HO778003 | 314 | 295 | 585 | 0.000000000000003 |
| HO778003 | 145 | 447 | 590 | 0.0005 |
| HO794758 | 111 | 137 | 243 | 0.003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
