y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT1G11920.1 |
Family | PL1 |
Protein Properties | Length: 385 Molecular Weight: 42692.6 Isoelectric Point: 9.5289 |
Chromosome | Chromosome/Scaffold: 1 Start: 4023667 End: 4025097 |
Description | pectate lyase precursor, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 98 | 304 | 0 |
IQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIFDSSHIWID HCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIFSE GNYFVAS |
Full Sequence |
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Protein Sequence Length: 385 Download |
MASLFLTIIS LLFAAFSSSV VEAAYSNGYT IPKLLPNPID SCWRRNPYWA SNRRALADCA 60 VGFGKSAVGG KYGSIYVVTN PSDDPENPRP GTLRYAVIQS KPLWITFARD MVIVLRNELI 120 MNSYKTIDGR GAKVEIAYGP CITIQHVSHV IIHGISIHDC KPGKSGRVRS SPTHVGSRKG 180 SDGDAIAIFD SSHIWIDHCF FSRCQDGLID VLHASTAVTI SNNYFTQHDK VMLLGHNDNN 240 VEDKIMRVTI AFNHFGPGLI ERMPRVRRGY AHVANNRYEK WQMYAIGGSA DPTIFSEGNY 300 FVASDDPSKK QVTKRIDSGY DWKRWKWRTS KDVFKNGAYF VPSGYGTVTP LYGRAERFPV 360 SHGSLVPLLT SSAGPLHCYS GRIC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-27 | 184 | 301 | 130 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-58 | 118 | 301 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-74 | 110 | 305 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0008150 | biological_process |
GO:0012505 | endomembrane system |
GO:0016829 | lyase activity |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 1 | 384 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193939.1 | 0 | 5 | 384 | 3 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_193940.1 | 0 | 6 | 384 | 4 | 393 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 1 | 384 | 1 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002518442.1 | 0 | 33 | 384 | 40 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 37 | 374 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 37 | 374 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-18 | 112 | 303 | 29 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 6e-17 | 129 | 301 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.00000000000005 | 62 | 317 | 22 | 305 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |