| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G13130.1 |
| Family | GH5 |
| Protein Properties | Length: 553 Molecular Weight: 61547.3 Isoelectric Point: 8.2657 |
| Chromosome | Chromosome/Scaffold: 1 Start: 4474720 End: 4477941 |
| Description | glycosyl hydrolase family 5 protein, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH5 | 42 | 355 | 1.79997e-41 |
| IVDENGLRVKLVCANWPSHLQPVVAEGLSKQPVDAVAKKIVEMGFNCVRLTWPLDLMTNETLANNVTVRQSFQSLGLNDDIVGFQTNNPSIIDLPLIEAY KTVVTTLGNNDVMVILDNHLTKPGWCCANDDGNGFFGDQFFDPTVWVAALKKMAATFNGVSNVVGMSLRNELRGPKQNVNDWFKYMQQGAEAVHSANNKV LVILSGLSFDADLSFVRSRPVKLSFTGKLVFELHWYSFSDGNSWAANNPNDICGRVLNRIGNGGGYLLNQGFPLFLSEFGIDERGVNTNDNRYFGCLTGW AAENDVDWSLWALT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 553 Download |
| MTSKEPKHMF FIFPFFCFFF SFIAQNTVPN MSYPLSTSSR WIVDENGLRV KLVCANWPSH 60 LQPVVAEGLS KQPVDAVAKK IVEMGFNCVR LTWPLDLMTN ETLANNVTVR QSFQSLGLND 120 DIVGFQTNNP SIIDLPLIEA YKTVVTTLGN NDVMVILDNH LTKPGWCCAN DDGNGFFGDQ 180 FFDPTVWVAA LKKMAATFNG VSNVVGMSLR NELRGPKQNV NDWFKYMQQG AEAVHSANNK 240 VLVILSGLSF DADLSFVRSR PVKLSFTGKL VFELHWYSFS DGNSWAANNP NDICGRVLNR 300 IGNGGGYLLN QGFPLFLSEF GIDERGVNTN DNRYFGCLTG WAAENDVDWS LWALTGSYYL 360 RQGKVGMNEY YGVLDSDWIS VRNSSFLQKI SFLQSPLQGP GPRTDAYNLV FHPLTGLCIV 420 RSLDDPKMLT LGPCNSSEPW SYTKKALRIK DQQLCLQSNG PKNPVTMTRT SCSTSGSKWQ 480 TISASRMHLA STTSNKTSLC LDVDTANNVV ANACKCLSKD KSCEPMSQWF KIIKATRPLK 540 SSRLYKEISS ML* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00458 | RICIN | 4.0e-8 | 411 | 514 | 113 | + Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication. | ||
| cd00161 | RICIN | 2.0e-9 | 407 | 532 | 135 | + Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture. | ||
| pfam00150 | Cellulase | 2.0e-14 | 71 | 356 | 301 | + Cellulase (glycosyl hydrolase family 5). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| GO:0043169 | cation binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD31066.1 | 0 | 31 | 552 | 1 | 522 | AC007357_15 F3F19.15 [Arabidopsis thaliana] |
| RefSeq | NP_172772.2 | 0 | 1 | 552 | 1 | 552 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_189245.1 | 0 | 31 | 537 | 1 | 508 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002315653.1 | 0 | 31 | 544 | 1 | 513 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515055.1 | 0 | 32 | 552 | 31 | 550 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1vrx_B | 0.000000000000002 | 37 | 381 | 8 | 339 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1vrx_A | 0.000000000000002 | 37 | 381 | 8 | 339 | A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant Y245g |
| PDB | 1ece_B | 0.00000000000002 | 37 | 381 | 8 | 339 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
| PDB | 1ece_A | 0.00000000000002 | 37 | 381 | 8 | 339 | A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic Domain In Complex With A Cellotetraose |
