y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT1G17150.1 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 43890.3 Isoelectric Point: 8.3624 |
Chromosome | Chromosome/Scaffold: 1 Start: 5865707 End: 5867495 |
Description | polygalacturonase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 390 | 0 |
KDACRWNGPSKMYIPLGTFYLGGVTFVGPCDGKISFVIDGTLLAPPNNDDIKKEIWINFRYINYLTVFGDGTLDGQGKKSWSLIDCQKDNNCPKLAINMG FDFVKNSSMNGITSLNSKAGHFNFLSVDHFSITRVNIIAPSNSPNTDGIKIALSSNMQISNTHISTGDDCIAMLSGNTNFDIYNVKCGPGHGISIGSLGK NKDEKNVNGLMVRNSVFTGTTNGIRIKTWESSASTIRIINLVYENLQMINVENPIGIDQKYCPYPPCSNMGDSHIQIRNVTLKNIWGTSKNKVAVKFQCS KTFPCKDVQLIDINLTHHGVDGPASALCENVDGS |
Full Sequence |
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Protein Sequence Length: 403 Download |
MAPCIDFVFM AFGLLLLLIA VTTSRPITRP KVFDVRSYGA KGDGKMDNTN AFTNAWKDAC 60 RWNGPSKMYI PLGTFYLGGV TFVGPCDGKI SFVIDGTLLA PPNNDDIKKE IWINFRYINY 120 LTVFGDGTLD GQGKKSWSLI DCQKDNNCPK LAINMGFDFV KNSSMNGITS LNSKAGHFNF 180 LSVDHFSITR VNIIAPSNSP NTDGIKIALS SNMQISNTHI STGDDCIAML SGNTNFDIYN 240 VKCGPGHGIS IGSLGKNKDE KNVNGLMVRN SVFTGTTNGI RIKTWESSAS TIRIINLVYE 300 NLQMINVENP IGIDQKYCPY PPCSNMGDSH IQIRNVTLKN IWGTSKNKVA VKFQCSKTFP 360 CKDVQLIDIN LTHHGVDGPA SALCENVDGS ATGKMVPPHC LS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-79 | 30 | 397 | 374 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-86 | 15 | 402 | 390 | + polygalacturonase | ||
PLN02793 | PLN02793 | 9.0e-87 | 4 | 402 | 409 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-89 | 60 | 387 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-122 | 33 | 400 | 372 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0012505 | endomembrane system |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD50028.1 | 0 | 1 | 402 | 8 | 369 | AC007651_23 Similar to polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_173158.1 | 0 | 1 | 402 | 1 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175003.1 | 0 | 5 | 401 | 4 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 4 | 401 | 3 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 5 | 401 | 4 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-18 | 123 | 337 | 113 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000006 | 113 | 387 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000006 | 113 | 387 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000006 | 113 | 387 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000006 | 113 | 387 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |