| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G19170.1 |
| Family | GH28 |
| Protein Properties | Length: 507 Molecular Weight: 56347.4 Isoelectric Point: 9.2803 |
| Chromosome | Chromosome/Scaffold: 1 Start: 6616643 End: 6618986 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 121 | 467 | 0 |
| GGGQLNVPPGRWLTAPFNLTSHMTLFLAEDSEILGVEDEKYWPLMPPLPSYGYGRERPGPRYGSLIHGQNLKDIVITGHNGTINGQGQSWWKKHQRRLLN YTRGPLVQIMWSSDIVIANITMRDSPFWTLHPYDCKNVTIRNVTILAPVTGAPNTDGIDPDSCEDMVIEDCYISTGDDAIAIKSGWDQFGIAYGRPSTNI LIRNLVVRSVISAGVSIGSEMSGGISNVTIENLLIWNSRRGIRIKTAPGRGGYIRNITYKNLTLDNVRVGIVIKTDYNEHADDNYDRKAYPILSGFSFAG IHGQGVRVPVRIHGSEQIPVRNVTFRDMSVGLTYKKKHIFQCSFVKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 507 Download |
| MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT 60 GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT LNTEAFERAV ISISKLGGSS 120 GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP 180 RYGSLIHGQN LKDIVITGHN GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI 240 TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI 300 AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR 360 GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH ADDNYDRKAY PILSGFSFAG 420 IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN 480 FDVYDEEGRL VKPAAESNVA DIDYDI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-24 | 200 | 480 | 286 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-26 | 75 | 478 | 427 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 8.0e-33 | 87 | 450 | 381 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-38 | 186 | 466 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-63 | 71 | 404 | 359 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005739 | mitochondrion |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF82228.1 | 0 | 1 | 506 | 1 | 533 | AC069143_4 Contains similarity to a polygalacturonase-like protein gi |
| GenBank | AAL91166.1 | 0 | 1 | 506 | 1 | 506 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_173351.1 | 0 | 1 | 506 | 1 | 506 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324728.1 | 0 | 1 | 505 | 1 | 494 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 11 | 505 | 10 | 493 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 80 | 447 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 80 | 447 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 80 | 447 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 80 | 447 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-18 | 132 | 450 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778855 | 452 | 11 | 462 | 0 |
| ES913671 | 288 | 194 | 481 | 0 |
| EX126330 | 299 | 152 | 450 | 0 |
| FN769574 | 314 | 162 | 475 | 0 |
| JK989090 | 297 | 211 | 507 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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