| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G23460.1 |
| Family | GH28 |
| Protein Properties | Length: 461 Molecular Weight: 49570.8 Isoelectric Point: 4.9345 |
| Chromosome | Chromosome/Scaffold: 1 Start: 8327312 End: 8329622 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 90 | 421 | 0 |
| WSKACSTSKSVFLVPEGRRYLVNATKFNGPCEQKLIIQIDGTIVAPDEPSNWDSKFQRIWLEFSKLKGVVFQGKGVIDGSGSKWWAASCKKNKSNPCKSA PTALTIESSSGVKVSGLTIQNSQQMNFIIARSDSVRVSKVMVSSPGDSPNTDGIHITGSTNVILQDCKIGTGDDCVSIVNASSNIKMKNIYCGPGHGISI GSLGKDNTTGIVTQVVLDTALLRETTNGLRIKTYQGGSGYVQGIRFTNVEMQDVANPILIDQFYCDSPTTCQNQTSAVKISQIMYRNITGTTKSAKAIKF ACSDTVPCSHIVLNNVNLEGNDGQVEAYCNSA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 461 Download |
| MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR 60 HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV FLVPEGRRYL VNATKFNGPC 120 EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK 180 NKSNPCKSAP TALTIESSSG VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT 240 DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI 300 VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC 360 QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI VLNNVNLEGN DGQVEAYCNS 420 AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-81 | 68 | 423 | 360 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-88 | 95 | 411 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 3.0e-89 | 65 | 436 | 380 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 4.0e-105 | 67 | 431 | 368 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-125 | 56 | 453 | 400 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC98004.1 | 0 | 2 | 460 | 1 | 457 | Similar to gb |
| GenBank | AAF79584.1 | 0 | 7 | 460 | 653 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
| RefSeq | NP_173760.2 | 0 | 1 | 460 | 1 | 460 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_177207.1 | 0 | 2 | 460 | 1 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002525360.1 | 0 | 2 | 460 | 1 | 505 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 9e-23 | 162 | 382 | 115 | 338 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 4e-20 | 166 | 409 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-20 | 166 | 409 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-20 | 166 | 409 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-20 | 166 | 409 | 80 | 321 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
