| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G30350.1 |
| Family | PL1 |
| Protein Properties | Length: 369 Molecular Weight: 40575.9 Isoelectric Point: 10.1446 |
| Chromosome | Chromosome/Scaffold: 1 Start: 10710079 End: 10711664 |
| Description | pectate lyase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 106 | 288 | 0 |
| FARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIRVFQSTHVWIDHCFLSRCHDGLIDVIVSSTAVTI SNNYFTQHDKVMLLGHDDSYMGDKDMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 369 Download |
| MASLVVIVSL LLAAFASPLL ETAHSYNVTA PRVSLNPIDA CWRRNPKWAT NRQALAHCAV 60 GYGKAAIGGK NGPIYVVTNP SDNPTRPSPG TLRYAVSQPK PLWITFARDM VIVLKSQLMI 120 NSYKTIDGRG AKVEIANGPC LRIRQVKHVI IHGISIHDCK ADPNGMDGDG IRVFQSTHVW 180 IDHCFLSRCH DGLIDVIVSS TAVTISNNYF TQHDKVMLLG HDDSYMGDKD MRVTIAFNTF 240 GPGLIERMPR VRRGYAHVAN NRYEKWQMYA IGGSANPIIF SEGNYFVAPE KRSSKQVTKR 300 MMAGPDSKRW KWGTSRDVFM NGAFFGPPGV IVRPLYKGGE GFRVAHGSLV PSLTSSAGPL 360 RCYVGRIC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-31 | 68 | 286 | 239 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-61 | 115 | 286 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-84 | 109 | 289 | 192 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008150 | biological_process |
| GO:0012505 | endomembrane system |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28424.1 | 0 | 21 | 368 | 21 | 368 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_172656.1 | 0 | 1 | 368 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_174324.1 | 0 | 21 | 368 | 21 | 368 | pectate lyase family protein [Arabidopsis thaliana] |
| Swiss-Prot | O65388 | 0 | 1 | 368 | 1 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
| RefSeq | XP_002518442.1 | 0 | 35 | 368 | 43 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 36 | 358 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 36 | 358 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 9e-20 | 64 | 288 | 19 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 3e-18 | 118 | 286 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 3e-16 | 115 | 293 | 73 | 283 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
