| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G32900.1 |
| Family | GT5 |
| Protein Properties | Length: 611 Molecular Weight: 66879.3 Isoelectric Point: 8.6998 |
| Chromosome | Chromosome/Scaffold: 1 Start: 11920390 End: 11923766 |
| Description | starch synthase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 86 | 582 | 0 |
| VIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYG PITGVDYNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFAFDDYSLLNLPI SFKSSFDFMDGYEKPVKGRKINWMKAAILEAHRVLTVSPYYAQELISGVDRGVELHKYLRMKTVSGIINGMDVQEWNPSTDKYIDIKYDITTVTDAKPLI KEALQAAVGLPVDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNVPLAHMITAGADFIIVPSRF EPCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMQEMVKNCMDQDFSWKGPARLWEKVL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 611 Download |
| MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP 60 VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG GLGDVLGGLP PALAARGHRV 120 MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG 180 SKIYGPITGV DYNDNQLRFS LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL 240 LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP 300 VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE 360 WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD VPVIGFIGRL EEQKGSDILV 420 EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII 480 VPSRFEPCGL IQLHAMRYGT VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA 540 TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA 600 PLAKENVATP * 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 1.0e-82 | 180 | 585 | 413 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 5.0e-99 | 84 | 575 | 509 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 5.0e-125 | 84 | 576 | 503 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 3.0e-163 | 84 | 585 | 508 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-167 | 86 | 582 | 509 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| GO:0009058 | biosynthetic process |
| GO:0009250 | glucan biosynthetic process |
| GO:0009507 | chloroplast |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACJ11735.1 | 0 | 1 | 610 | 1 | 609 | granule bound starch synthase [Gossypium hirsutum] |
| GenBank | ACJ11751.1 | 0 | 1 | 610 | 1 | 609 | granule bound starch synthase [Gossypium hirsutum] |
| GenBank | ACV72639.1 | 0 | 1 | 610 | 1 | 609 | granule-bound starch synthase 1 [Gossypium hirsutum] |
| RefSeq | NP_174566.1 | 0 | 1 | 610 | 1 | 610 | starch synthase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002300507.1 | 0 | 1 | 610 | 1 | 610 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 84 | 610 | 10 | 536 | A Chain A, Trehalose-6-Phosphate Synthase. Otsa |
| PDB | 3vue_A | 0 | 84 | 610 | 10 | 536 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 84 | 586 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 84 | 587 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 84 | 587 | 1 | 478 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| AJ568414 | 611 | 1 | 611 | 0 |
| CN831271 | 382 | 230 | 611 | 0 |
| HO629148 | 537 | 78 | 611 | 0 |
| HO825853 | 518 | 92 | 609 | 0 |
| HO778340 | 378 | 76 | 451 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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