| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G43080.1 |
| Family | GH28 |
| Protein Properties | Length: 405 Molecular Weight: 44244.5 Isoelectric Point: 8.9543 |
| Chromosome | Chromosome/Scaffold: 1 Start: 16213995 End: 16215828 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 57 | 392 | 0 |
| ACTRISGSSKIYVPKGTFYLGGVEFVGPCKNPIEFVIDGTLLAPANPRDIKQDTWINFRYINNLSISGSGTLDGQGKYSWPLNDCHKNTNCPKLAMTMGF AFVNNSRIKDITSLNSKMGHFNFFSVHRFNITGVTITAPGDSPNTDGIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNIKCGPGHGISVGSLGKN KDEKDVKHLTVRDTVFNGTSDGIRIKTWESSASKIVVSNFIYENIQMIDVGKPINIDQKYCPHPPCEHEKKGESHVQIQDIKLKNIYGTSNNIVAVNLQC SKSFPCKNVELIDINLKHTGLEKGHSTAMCENVDGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 405 Download |
| MVSIASTFKA LCLSFLFIAV ASRPTIRPKV FNVRRYGSRP DGKTDNANAF TSVWKRACTR 60 ISGSSKIYVP KGTFYLGGVE FVGPCKNPIE FVIDGTLLAP ANPRDIKQDT WINFRYINNL 120 SISGSGTLDG QGKYSWPLND CHKNTNCPKL AMTMGFAFVN NSRIKDITSL NSKMGHFNFF 180 SVHRFNITGV TITAPGDSPN TDGIKMGSCS NIHISNTNIG TGDDCIAILS GTTNLDISNI 240 KCGPGHGISV GSLGKNKDEK DVKHLTVRDT VFNGTSDGIR IKTWESSASK IVVSNFIYEN 300 IQMIDVGKPI NIDQKYCPHP PCEHEKKGES HVQIQDIKLK NIYGTSNNIV AVNLQCSKSF 360 PCKNVELIDI NLKHTGLEKG HSTAMCENVD GSVRSKMVPQ HCLD* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-79 | 24 | 403 | 390 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 5.0e-80 | 1 | 404 | 408 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-81 | 23 | 400 | 385 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-96 | 58 | 389 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-121 | 31 | 402 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_175003.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 1 | 396 | 1 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175005.1 | 0 | 1 | 396 | 1 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_181560.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_193112.2 | 0 | 1 | 404 | 1 | 404 | polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-22 | 109 | 367 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.000000000000005 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000000005 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000000005 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.000000000000005 | 119 | 389 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
