| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G48100.1 |
| Family | GH28 |
| Protein Properties | Length: 476 Molecular Weight: 51352.6 Isoelectric Point: 4.583 |
| Chromosome | Chromosome/Scaffold: 1 Start: 17766874 End: 17769951 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 105 | 432 | 0 |
| AACAVESGVVLAPEGGVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWDLPCKPHRGPDGSSSS GPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGPS HGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLNCIIVDQYYCQSKDCRNETSAVKVFDVEYRNIKGTYDVRS PPIHFACSDTVACTNITMSEVELLPEEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP 60 SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ DAWKAACAVE SGVVLAPEGG 120 VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV 180 EGNGQKWWDL PCKPHRGPDG SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG 240 CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT 300 CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM 360 ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY DVRSPPIHFA CSDTVACTNI 420 TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 9.0e-74 | 80 | 458 | 388 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 5.0e-74 | 80 | 454 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-87 | 113 | 423 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 9.0e-91 | 82 | 422 | 345 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-106 | 79 | 471 | 396 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF79535.1 | 0 | 1 | 475 | 1 | 492 | AC023673_23 F21D18.18 [Arabidopsis thaliana] |
| GenBank | AAK95305.1 | 0 | 1 | 475 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
| RefSeq | NP_175244.1 | 0 | 1 | 475 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263668.1 | 0 | 71 | 475 | 73 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002519290.1 | 0 | 1 | 475 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 4e-24 | 142 | 427 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-24 | 142 | 427 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-24 | 142 | 427 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-24 | 142 | 427 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 4e-24 | 142 | 427 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
