y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT1G56710.1 |
Family | GH28 |
Protein Properties | Length: 435 Molecular Weight: 47442.9 Isoelectric Point: 7.0924 |
Chromosome | Chromosome/Scaffold: 1 Start: 21258008 End: 21259933 |
Description | polygalacturonase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 414 | 0 |
TGPKSALLLVPYTFCFLVKPTTFNGPCRTNLVLQIDGFIVSPDGPRSWPSNYQRQWMMFYRVNGLSIQGSGVINGRGQKWWNLPCKPHKGLNGTTQTGPC DSPVAIRLFQSSKVRIQGINFMNSAQFHVRFDNCSDVVVDSVIIKAPASSPNTDGIHIENTHNVQIRNSMISNGDDCISIGAGCFNVDIKNVTCGPSHGI SIGSLGVHNSQAYVSNITVTNSTIWNSDNGVRIKTWQGGSGSVSRIVFSNILMVNVRNPIMIDQYYCQTNNCANQTSAVIISDVLYANIKGTYDLRSPPI HFGCSDSVPCTNLTLTEVDLFPSKGQHLENPFCWNAY |
Full Sequence |
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Protein Sequence Length: 435 Download |
MSLPNSLFYT FFLILFSTIR IAQSIYLSPS PAPNPAYNDN DNIAPTVFDV TSFGAIGDCS 60 TDDTSAFKMA WDAACMSTGP KSALLLVPYT FCFLVKPTTF NGPCRTNLVL QIDGFIVSPD 120 GPRSWPSNYQ RQWMMFYRVN GLSIQGSGVI NGRGQKWWNL PCKPHKGLNG TTQTGPCDSP 180 VAIRLFQSSK VRIQGINFMN SAQFHVRFDN CSDVVVDSVI IKAPASSPNT DGIHIENTHN 240 VQIRNSMISN GDDCISIGAG CFNVDIKNVT CGPSHGISIG SLGVHNSQAY VSNITVTNST 300 IWNSDNGVRI KTWQGGSGSV SRIVFSNILM VNVRNPIMID QYYCQTNNCA NQTSAVIISD 360 VLYANIKGTY DLRSPPIHFG CSDSVPCTNL TLTEVDLFPS KGQHLENPFC WNAYGSMKIT 420 VPPVYCLLDA PPDF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-81 | 48 | 431 | 390 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 9.0e-84 | 44 | 413 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-88 | 75 | 397 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-99 | 44 | 397 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-128 | 47 | 429 | 385 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0012505 | endomembrane system |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_176064.1 | 0 | 1 | 434 | 1 | 434 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002276945.1 | 0 | 6 | 430 | 12 | 451 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 26 | 434 | 56 | 463 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 47 | 434 | 21 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 47 | 434 | 74 | 461 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 2e-24 | 49 | 429 | 22 | 362 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 1e-23 | 107 | 401 | 35 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-23 | 107 | 401 | 35 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-23 | 107 | 401 | 35 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-23 | 107 | 401 | 35 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |