| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G58370.1 |
| Family | CBM22 |
| Protein Properties | Length: 918 Molecular Weight: 102459 Isoelectric Point: 6.0988 |
| Chromosome | Chromosome/Scaffold: 1 Start: 21684584 End: 21688321 |
| Description | glycosyl hydrolase family 10 protein, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 199 | 334 | 1.1e-32 |
| IVVNPNFEDGLNNWSGRSCKIVLHDSMADGKIVPESGKVFASATERTQNWNGIQQEITGKVQRKRVYEATAVVRIYGNNVTTATVQATLWVQNPNQRDQY IGISTVQATDKEWIHLKGKFLLNGSASRVVIYIEGP | |||
| CBM22 | 29 | 168 | 2.5e-33 |
| NVIVNHDFSSGMHSWHPNCCEAFVVTAESNVSHGVLDPSKCGSYVVVKNRKETWQGLEQDITNRVKPCSLYKVSATVAVSGPVHGLVEVMATLKLESQQS QTNYQFIAKTCVFKEKWVRLEGMFSLPSLPEKVVFYLEGP | |||
| CBM22 | 369 | 511 | 2.79979e-42 |
| NILTNSHLSDDTTNGWFSLGNCTLSVAEGSPRILPPMARDSLGAHERLSGRYILVTNRTQTWMGPAQMITDKLKLFLTYQISVWVKVGSGINSPQNVNVA LGIDSQWVNGGQVEINDDRWHEIGGSFRIEKNPSKALVYVQGP | |||
| GH10 | 570 | 844 | 0 |
| IRNSFPVGTCISRSNIDNEDFVDFFLKNFNWAVFANELKWYWTEPEQGKLNYQDADDMLNLCSSNNIETRGHCIFWEVQATVQQWIQNMNQTDLNNAVQN RLTDLLNRYKGKFKHYDVNNEMLHGSFYQDKLGKDIRVNMFKTAHQLDPSATLFVNDYHIEDGCDPKSCPEKYTEQILDLQEKGAPVGGIGIQGHIDSPV GPIVCSALDKLGILGLPIWFTELDVSSVNEHIRADDLEVMMWEAFGHPAVEGIMLWGFWELFMSRDNSHLVNAEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 918 Download |
| MEVSRKDNEE PEKQNNNNVA SIIGSDRTNV IVNHDFSSGM HSWHPNCCEA FVVTAESNVS 60 HGVLDPSKCG SYVVVKNRKE TWQGLEQDIT NRVKPCSLYK VSATVAVSGP VHGLVEVMAT 120 LKLESQQSQT NYQFIAKTCV FKEKWVRLEG MFSLPSLPEK VVFYLEGPSP GIDLLIQSVT 180 IHRESEPELE RVTAEDETIV VNPNFEDGLN NWSGRSCKIV LHDSMADGKI VPESGKVFAS 240 ATERTQNWNG IQQEITGKVQ RKRVYEATAV VRIYGNNVTT ATVQATLWVQ NPNQRDQYIG 300 ISTVQATDKE WIHLKGKFLL NGSASRVVIY IEGPPPGTDI LLNSLTVKHA EKIPPSPPPS 360 IENPAFGVNI LTNSHLSDDT TNGWFSLGNC TLSVAEGSPR ILPPMARDSL GAHERLSGRY 420 ILVTNRTQTW MGPAQMITDK LKLFLTYQIS VWVKVGSGIN SPQNVNVALG IDSQWVNGGQ 480 VEINDDRWHE IGGSFRIEKN PSKALVYVQG PSSGIDLMVA GLQIFPVDRL ARIKHLKRQC 540 DKIRKRDVIL KFAGVDSSKF SGASVRVRQI RNSFPVGTCI SRSNIDNEDF VDFFLKNFNW 600 AVFANELKWY WTEPEQGKLN YQDADDMLNL CSSNNIETRG HCIFWEVQAT VQQWIQNMNQ 660 TDLNNAVQNR LTDLLNRYKG KFKHYDVNNE MLHGSFYQDK LGKDIRVNMF KTAHQLDPSA 720 TLFVNDYHIE DGCDPKSCPE KYTEQILDLQ EKGAPVGGIG IQGHIDSPVG PIVCSALDKL 780 GILGLPIWFT ELDVSSVNEH IRADDLEVMM WEAFGHPAVE GIMLWGFWEL FMSRDNSHLV 840 NAEGDVNEAG KRFLAVKKDW LSHANGHIDQ NGAFPFRGYS GNYAVEVITT SSSKVLKTFG 900 VDKEDSSQVI TVDLQGL* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 5.0e-15 | 199 | 338 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 4.0e-18 | 368 | 513 | 151 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-32 | 552 | 827 | 298 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 5.0e-80 | 570 | 857 | 308 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-81 | 607 | 853 | 268 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005618 | cell wall |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0031176 | endo-1,4-beta-xylanase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG50641.1 | 0 | 1 | 917 | 1 | 915 | AC082643_5 xylan endohydrolase isoenzyme, putative [Arabidopsis thaliana] |
| RefSeq | NP_176133.1 | 0 | 1 | 917 | 1 | 917 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002301133.1 | 0 | 25 | 914 | 160 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 29 | 531 | 2 | 491 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 197 | 524 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 1e-28 | 597 | 826 | 39 | 268 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 1i1w_A | 1e-28 | 597 | 826 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1xyz_B | 2e-28 | 561 | 827 | 24 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 2e-28 | 561 | 827 | 24 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 2bnj_A | 3e-28 | 597 | 795 | 39 | 241 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-beta-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB442796 | 298 | 397 | 694 | 0 |
| EL428755 | 280 | 574 | 853 | 0 |
| EX570690 | 295 | 620 | 914 | 0 |
| EB442796 | 116 | 232 | 347 | 0.0000001 |
| EB442796 | 131 | 69 | 195 | 0.0000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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