| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G60590.1 |
| Family | GH28 |
| Protein Properties | Length: 541 Molecular Weight: 59631 Isoelectric Point: 6.9135 |
| Chromosome | Chromosome/Scaffold: 1 Start: 22314170 End: 22316970 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 147 | 493 | 0 |
| ASACKVEASTMIIPPDYIFLVGPISFSGPYCQANIVFQLEGMIVAPTDTESWGGGLMWWIEFTKLSGITIQGNGVIDGRGTVWWQQDYLSDYPIDDDFKL IVPLNNSVQERPPMPIRSELNWRMPSIKPTALRFYGSIDVTVTGITIQNSPQCHLKFDNCVKVLVHDVNVSSPGDSPNTDGIHLQNTRDVMIHTTTLACG DDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDSTKACVSNITVRDVVMHNTMTGVRIKTWQGGIGSVKGILFSNIQLTEVQLPIVIDQFYCDHSKCMN HTSAVSVEGVTYEKIRGTYTVKPVHFACSDSFPCIDVQLSGIELKPV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 541 Download |
| MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH 60 ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP PPPHVQPPPT PLPLQPVEDS 120 QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN 180 IVFQLEGMIV APTDTESWGG GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI 240 DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH 300 LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY 360 VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM TGVRIKTWQG GIGSVKGILF 420 SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC 480 IDVQLSGIEL KPVQLQYHMY DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL 540 * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-77 | 123 | 491 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-78 | 150 | 490 | 342 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 1.0e-80 | 121 | 490 | 375 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-87 | 124 | 491 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-104 | 123 | 522 | 407 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF17670.1 | 0 | 1 | 539 | 1 | 542 | AC009398_19 F20B24.8 [Arabidopsis thaliana] |
| GenBank | AAL31197.1 | 0 | 67 | 540 | 1 | 474 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
| GenBank | ABK95830.1 | 0 | 1 | 539 | 1 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_563875.6 | 0 | 1 | 539 | 1 | 532 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_564758.2 | 0 | 1 | 540 | 1 | 540 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-19 | 199 | 438 | 96 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 5e-19 | 274 | 490 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-19 | 274 | 490 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-19 | 274 | 490 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-19 | 274 | 490 | 99 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
